Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00689 ATGTTCCCTTACAGTTCAAACCCTTACCCTTCTTTTCTTCCCTCATCTTCATCATCTTCTTCACTCTTTCCTTTTCCATTCCTCAATCCTGAAAATGCTTCATCAAACAACAATAACAATACTCTTTTTCTTGATCCATTTTCCATTCCTTACATACCAACTCATCATCCTCATAATCATAACATTACAAATATTCCAGAAACCCTAACCAACTTGGCTGTTTCACAAGAAAATAATAATAGTAACAACAATAATAACATTGCGGTTTCGATGCCTAAACAAGATCCTTCAACTCTTGGTGGTTCTAATTCTCACTATGGTATTTCTTGTTTCCTTACAAAGAAACCGGTTAAGAAAGACCGGCATAGTAAGATTTATACTTCTCAAGGTTTGAGAGATCGGAGGGTTAGGCTTTCAATTGAGATTGCTCGAAAGTTCTTCGATCTTCAAGATATGCTAGGGTTTGACAAAGCTAGCAACACACTTGATTGGCTTTTCACAAAATCTAAGAAAGCAATTAAGGATCTAACTAAGAGTAAGCAAAAAAATAAAAATAGTGAAGGTGTTGATGCTTCTAAAAGCTTCTCATCTTCTTCGGATTGTGAAGATTCCGAAGTTGCTATTAATGAAATGGAGGGTGCAGGAAGTAAAATTGAAGAGAGGAAGTTGAAAAGGGTTCAAATCAAAGAACCAGCTTGTGTTAGGGCTAATAAGTTGAAGGAGTCAAGGGAAAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGCAACAAGATCTCCAACATAAGGGGGGTGCAGGAATTAGAATTGAAGAAAAAGTATGAAAATAATCTTCAAGCTTTTCAACAATCAAGATCTTCACAAGATCATCAACTTGTGAGTAGTAGTGAAGGACCAAGAAATGATTTCAATGTTATTGAGGAATCAATTGTGATTAAGAGGAAGCTAAAACCTTCAATGATGGTTTCTCATCATCATAATCATAATCATAATCATAATCATCATCATCATAACCATCAAAATCATGTGATCCCTAAGGAAGCTACAAGTTTCAACAATAATGGTGATTATCATTTCTTGCCTAATTCATCTCCAAATTGGGATGCTAATAATGGTACTTCCTCTACTAATCGCTCCACCTTTTGTGCAATAGCTAGCATGAATCTTTCTGCAGGGCTTCAAATCTTTGGAAAATCATGGGAGGAATGCACCAATCCACGTCTACATTAG 1227 0.3602 MFPYSSNPYPSFLPSSSSSSSLFPFPFLNPENASSNNNNNTLFLDPFSIPYIPTHHPHNHNITNIPETLTNLAVSQENNNSNNNNNIAVSMPKQDPSTLGGSNSHYGISCFLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSKQKNKNSEGVDASKSFSSSSDCEDSEVAINEMEGAGSKIEERKLKRVQIKEPACVRANKLKESREKARARARERTSNKISNIRGVQELELKKKYENNLQAFQQSRSSQDHQLVSSSEGPRNDFNVIEESIVIKRKLKPSMMVSHHHNHNHNHNHHHHNHQNHVIPKEATSFNNNGDYHFLPNSSPNWDANNGTSSTNRSTFCAIASMNLSAGLQIFGKSWEECTNPRLH 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00689 408 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Trre11g00689 408 MobiDBLite consensus disorder prediction 280 299 - -
Trre11g00689 408 MobiDBLite consensus disorder prediction 188 203 - -
Trre11g00689 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 348 IPR005333 GO:0003700
Trre11g00689 408 Pfam TCP family transcription factor 117 258 IPR017887 -
Trre11g00689 408 ProSiteProfiles R domain profile. 240 257 IPR017888 -
Trre11g00689 408 MobiDBLite consensus disorder prediction 176 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00689 Trre-Chr11 5647644 5649803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00689 55 259 TCP Transcription Factor Family AT1G67260 36.364 3.11e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre11g00689 TCP 4.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00689 - - cam:101499957 502.671