Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00670 ATGAAACAAACTGTTAAAGTTATAGGGTTTTGTCCTGTAGTGAACAGATTAAAGAAAACAACTGTATCATCATTTGTCCTGGATTGTGAACTTGTTGCATATGATCGTGCAAAGCGTAAAATCCTTACTTTGCAGGAGCTTAGTACTCGGGCTCGCAAAGATGTAGGTACGAGTGACATAGAGGTTAATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGACAAACACTTCTTCAAGAAGACCTGAAAATCCGCAAGGAGGGGGACACACTAGATTTGGGGCCTATTGGTGCTTACTATGGTTCTAGGAAACGTAAAGGATTCTATGGTTCCTTTCTCCTTGCTTGCTATGACAACGGAAATGAAGAATATCAAACTATTTGTAAAGTGGGAACTGGATTCAGTGATAAAAACCTTAAAGAACTTTTTGCTACCCTCCGCTCTAAAGTGATTCTGAAACCAAAGGCAAAGTATCGATATAATGCAAAAGAAACCAAACCTGATGTCTGGTTTGAAGACTGTGAGGTGTTTGAGGTGAAAGCTTCAGACCTGAACTGTAGTTCTGAATACCCAGCTGCTATAGGCTTAGTAAATTCGGATAAGGGCATATCTCTTCGTGGTGCAGGTCTAGTTGCGGTTCGTATTGACAAAGCCCCTAATCAAGCCACATCGTCTGAGCAGGTTGCTGAAATGTATAAAGCTCAAGAACAAAGAAAAGAACCAAACAAACAATCCAATATGACAAATGAAGATGAAGATATAGGAGATTGA 777 0.3925 MKQTVKVIGFCPVVNRLKKTTVSSFVLDCELVAYDRAKRKILTLQELSTRARKDVGTSDIEVNVCIFAFDLLYLNGQTLLQEDLKIRKEGDTLDLGPIGAYYGSRKRKGFYGSFLLACYDNGNEEYQTICKVGTGFSDKNLKELFATLRSKVILKPKAKYRYNAKETKPDVWFEDCEVFEVKASDLNCSSEYPAAIGLVNSDKGISLRGAGLVAVRIDKAPNQATSSEQVAEMYKAQEQRKEPNKQSNMTNEDEDIGD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00670 258 CDD OBF_DNA_ligase_I 90 236 - -
Trre11g00670 258 Gene3D - 89 251 IPR012340 -
Trre11g00670 258 ProSiteProfiles ATP-dependent DNA ligase family profile. 73 120 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre11g00670 258 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 9 89 - -
Trre11g00670 258 Pfam ATP dependent DNA ligase domain 15 89 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre11g00670 258 Pfam ATP dependent DNA ligase C terminal region 107 219 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre11g00670 258 FunFam DNA ligase 87 247 - -
Trre11g00670 258 SUPERFAMILY Nucleic acid-binding proteins 90 237 IPR012340 -
Trre11g00670 258 MobiDBLite consensus disorder prediction 234 252 - -
Trre11g00670 258 MobiDBLite consensus disorder prediction 223 258 - -
Trre11g00670 258 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 19 89 - -
Trre11g00670 258 Gene3D DNA ligase/mRNA capping enzyme 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00670 Trre-Chr11 5494707 5496930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00670 14 89 Core DNA Replication Machinery Family AT1G08130 68.421 3.93e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00670 K10747 - dcr:108223221 200.675