LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00644	ATGACTACTCGTAACTCGTATTGGGATCTTGTTTGGAGTGCACCAAGAATCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACAAGGATGGCCAGATTTTGATATGAGTGAAACAAGGATCACTTTCAAGCTCAGAAAAGATAATGCTTTCATGGTTCATCAATTTGCTTGTGGTAATAGAAAGAAGCCTAATTGGATTTTTCCCAAAACAAGGGTACAACCCAACAGCAATGATTGTGGATATTATGTAATGAAGAATATGATTGACATTGCCTCTGCTAGTGTTACAAAGAAATGGGATGAGGTGTTCAATGATCCTACGGCATTATCAGAAGATGACTTGTTCAGCACTTCTCTGCTTGCTCGACCCCTTTTCTCAGTTTTCAGATTTTTTGTTCACATAGGATTGGAATACATGTTCACACATTCAGGTTTGCAGGCAGAGTTTCCACCCAATACAAACATCTTATATGTTGATTTACCATTTGCGGAGCTAGTTGGATTGAGTAAGAATGTGAATAATATACCATTACCTGGAATAGTGTTAAATACAAGAAAGCCAATGGTTTATGTAGATCAGTTTGGAAGACAGTGTAGAGGCAGTCAGCTAGAGGCACTTGAAATTCAACCGCCGCCGCTCATTCTATTGCCGACGGTTATCGCGGCGTTTTCCAACCGCCGCCGCTCACAAGCAATTACCGACATGCACTCTGCGGCGTTTATGGGTGTATCTGCGGCGGTTCATTTTCTCTCTCTCTTATTCTCTGTCACGAACTCACTCATCACCATCACATTACTTCATCACCACCGCAACCCATTGTTTTCAACAAAGAAAGGGCAAAATCAATTTCAGGTGCTTTCAATTTCACCATCGCATCACTTGATCAACCCCTTAAATTTTGGAAAATGA	1074	0.4013	MTTRNSYWDLVWSAPRIKGYFDVINGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLQGWPDFDMSETRITFKLRKDNAFMVHQFACGNRKKPNWIFPKTRVQPNSNDCGYYVMKNMIDIASASVTKKWDEVFNDPTALSEDDLFSTSLLARPLFSVFRFFVHIGLEYMFTHSGLQAEFPPNTNILYVDLPFAELVGLSKNVNNIPLPGIVLNTRKPMVYVDQFGRQCRGSQLEALEIQPPPLILLPTVIAAFSNRRRSQAITDMHSAAFMGVSAAVHFLSLLFSVTNSLITITLLHHHRNPLFSTKKGQNQFQVLSISPSHHLINPLNFGK	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00644	357	Pfam	Rhamnogalacturonate lyase family	6	133	IPR010325	-
	Trre11g00644	357	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	4	105	-	-
	Trre11g00644	357	SUPERFAMILY	Cysteine proteinases	114	146	IPR038765	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00644	Trre-Chr11	5191168	5198141	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00644	3	128	Polysaccharide Lyase	AT1G09910	59.231	3.83e-42	153

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00644	K18195		-	gmx:100814185	192.586