Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00643 ATGATATCCACCAGATACAAAAGTAAACGCGGTGGTTCCTCCATCGCTCTCACCCACTATTTCGATCCGTTCACTCTCTCGGTTCCTCCATCGCTCTCACTCACCATCTCTGATTCTCAATCGCCCATCTCTGTTCATCACTCTCTCGGTTCCTATCAATCTCAATCGAAAGTTCCTATCAATCTCAATCGAAAGTTCCTCTCCGAATCTAAGACGACCCAGGAGTCTATTAACAACAATCTCGCTCTTGTGATGAAGAGTGGGAAGTATACTTTGGGGTATAAAACTGTTCTCAAGTCTCTCAGAAGCTCCAAAGGGATTGCATAG 327 0.4495 MISTRYKSKRGGSSIALTHYFDPFTLSVPPSLSLTISDSQSPISVHHSLGSYQSQSKVPINLNRKFLSESKTTQESINNNLALVMKSGKYTLGYKTVLKSLRSSKGIA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00643 108 SUPERFAMILY L30e-like 76 105 IPR029064 -
Trre11g00643 108 PANTHER RIBOSOMAL PROTEIN L30 69 106 IPR039109 GO:0003723
Trre11g00643 108 Gene3D - 67 107 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00643 Trre-Chr11 5189506 5190248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00643 69 106 Cytoplasmic Ribosomal Protein Gene Family AT3G18740 76.316 2.47e-13 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00643 K02908 - atr:18427064 67.3958