LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00642	ATGGAGAAGCTAAGAGAAGAAGCTTTTCTATGTTTTGTAACATTGTTCTTGTTTTGGAGTTCTACAAATGCTTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGAACATAAAAGGTTCTTTAGTTGATCCTCATGGAATTCTAGAAAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCCACTGAGAATCTTGTTATAAGCTTGGGCATTCCTAGTCAGAATTTGTCTGGTACATTATCTCCAAGCATAGGAAACTTAACCAATCTTCAAACTATAGTGTTGCAGAATAACAACATAACTGGACCAATTCCTTCAGAGCTAGGAAAACTTTCAATGCTTCAAACACTTGATATTTCTGATAACTTTTTCAATGGAAAAATTCCTCCTTCTCTTGGTTATCTAAGAAACCTTCAGTACTTGAGGCTTAATAATAACAGCTTTTCTGGTGAATGTCCTGAGTCACTTGCTAACATGGCACAACTTACTTTCCTTGACTTATCATTCAACAATCTTAGTGGCTCCGTGCTTCGAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTGGTGTGTGCCATAGGAAAAGAAACAAATTGCCATGGGATGAAACTCATGCCTATGTCAATGAACTTAAACAATACTAACTATGCATTACCATCAAGGAGGAAAAAAGCTCACAAAATGGCCATTATCTTTGGTTTGAGTCTTGGATGTCTTTGCTTGTTAGTCCTTGGCTTCGGATTGGTACTATGGAGAAGACATAAGCATAATCGACAAGCATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACTTAGGAAACTTGAAAAGCTTCCAATTAAGAGAACTTCAGATTGCTACTCACAACTTCAGCAACAAAAACATATTGGGAAAAGGTGGTTTCGGCGATGTCTACAAAGGAATTCTTTCGGATGGAACACTTGTGGCTGTAAAGAGACTTAAAGATGGCAATATCAGTGGAGGAGAGATACAATTTCAGACTGAAGTTGAAATGATCAGTTTGGCAGTGCACAGAAACCTTCTTAAATTGTATGGATTTTGTATGACAACATCAGAAAGGCTCTTAGTTTACCCTTACATGTCCAATGGCAGCGTCGCTTCACGTCTCAAGGCTAAGCCAGTGTTGGATTGGGGCACAAGAAAGCAAATTGCATTAGGAGCTGGAAGAGGACTATTATACCTTCATGAGCAATGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCAAATATATTACTTGATGATTATTGTGAAGCAGTAGTTGGAGATTTTGGTTTGGCAAAGCTTTTAGACCACAAAGATTCACATGTTACAACTGCAGTTAGGGGCACAGTAGGACATATAGCACCTGAGTATCTTTCCACAGGACAATCTTCTGAAAAGACTGATGTTTTTGGATTTGGCATTTTGCTTCTTGAGTTGATCACAGGTTTGAGGGCTCTAGAATTTGGAAAGGCAGCTAACCAAAAAGGAGTTATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTAGATTTACTTGTAGATAAGGATCTCAAGAACAACTATGACAAGATTGAGCTTGAAGAAATAGTTCAAGTTGCACTTTTATGTACACAATACCTTCCAGGCCACAGACCGAAAATGTCTGAAGTCGTACGCATGCTCGAAGGTGACGGTTTAGCTGAGAAATGGGAAGCTTCTCAACGAGCCGACAACTCTACCAAGTGCAAACCACATGAATTATCTTCGTCCGATCGGTATTCCGATCTTACCGATGATTCTTCATTGTTAATCCAAGCCATGGAGCTTTCAGGTCCAAGGTGA	1878	0.3887	MEKLREEAFLCFVTLFLFWSSTNALLSPKGINFEVQALMNIKGSLVDPHGILENWDGDAVDPCSWNMVTCSTENLVISLGIPSQNLSGTLSPSIGNLTNLQTIVLQNNNITGPIPSELGKLSMLQTLDISDNFFNGKIPPSLGYLRNLQYLRLNNNSFSGECPESLANMAQLTFLDLSFNNLSGSVLRILAKSFSIVGNPLVCAIGKETNCHGMKLMPMSMNLNNTNYALPSRRKKAHKMAIIFGLSLGCLCLLVLGFGLVLWRRHKHNRQAFFDVKDRHHEEVYLGNLKSFQLRELQIATHNFSNKNILGKGGFGDVYKGILSDGTLVAVKRLKDGNISGGEIQFQTEVEMISLAVHRNLLKLYGFCMTTSERLLVYPYMSNGSVASRLKAKPVLDWGTRKQIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGVMLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRADNSTKCKPHELSSSDRYSDLTDDSSLLIQAMELSGPR	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00642	625	SUPERFAMILY	L domain-like	34	205	-	-
	Trre11g00642	625	SUPERFAMILY	Protein kinase-like (PK-like)	281	574	IPR011009	-
	Trre11g00642	625	FunFam	Somatic embryogenesis receptor-like kinase 1	381	593	-	-
	Trre11g00642	625	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	31	213	-	-
	Trre11g00642	625	Gene3D	Phosphorylase Kinase; domain 1	273	380	-	-
	Trre11g00642	625	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	12	584	-	-
	Trre11g00642	625	Gene3D	Ribonuclease Inhibitor	31	213	IPR032675	-
	Trre11g00642	625	FunFam	Somatic embryogenesis receptor kinase 1	273	380	-	-
	Trre11g00642	625	ProSitePatterns	Protein kinases ATP-binding region signature.	310	332	IPR017441	GO:0005524
	Trre11g00642	625	SMART	serkin_6	304	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00642	625	ProSiteProfiles	Protein kinase domain profile.	304	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00642	625	Pfam	Leucine Rich Repeat	124	143	IPR001611	GO:0005515
	Trre11g00642	625	Pfam	Leucine rich repeat N-terminal domain	34	71	IPR013210	-
	Trre11g00642	625	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Trre11g00642	625	MobiDBLite	consensus disorder prediction	584	605	-	-
	Trre11g00642	625	Gene3D	Transferase(Phosphotransferase) domain 1	381	593	-	-
	Trre11g00642	625	Pfam	Protein kinase domain	305	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00642	625	MobiDBLite	consensus disorder prediction	584	607	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00642	Trre-Chr11	5152302	5156886	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00642	1	625	Receptor kinase-like Gene Family	AT5G16000	75.158	0.0	970

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Trre11g00642		Pkinase	2.1e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00642	-		-	gmx:100806650	1067.37