Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00642 ATGGAGAAGCTAAGAGAAGAAGCTTTTCTATGTTTTGTAACATTGTTCTTGTTTTGGAGTTCTACAAATGCTTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGAACATAAAAGGTTCTTTAGTTGATCCTCATGGAATTCTAGAAAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCCACTGAGAATCTTGTTATAAGCTTGGGCATTCCTAGTCAGAATTTGTCTGGTACATTATCTCCAAGCATAGGAAACTTAACCAATCTTCAAACTATAGTGTTGCAGAATAACAACATAACTGGACCAATTCCTTCAGAGCTAGGAAAACTTTCAATGCTTCAAACACTTGATATTTCTGATAACTTTTTCAATGGAAAAATTCCTCCTTCTCTTGGTTATCTAAGAAACCTTCAGTACTTGAGGCTTAATAATAACAGCTTTTCTGGTGAATGTCCTGAGTCACTTGCTAACATGGCACAACTTACTTTCCTTGACTTATCATTCAACAATCTTAGTGGCTCCGTGCTTCGAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTGGTGTGTGCCATAGGAAAAGAAACAAATTGCCATGGGATGAAACTCATGCCTATGTCAATGAACTTAAACAATACTAACTATGCATTACCATCAAGGAGGAAAAAAGCTCACAAAATGGCCATTATCTTTGGTTTGAGTCTTGGATGTCTTTGCTTGTTAGTCCTTGGCTTCGGATTGGTACTATGGAGAAGACATAAGCATAATCGACAAGCATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACTTAGGAAACTTGAAAAGCTTCCAATTAAGAGAACTTCAGATTGCTACTCACAACTTCAGCAACAAAAACATATTGGGAAAAGGTGGTTTCGGCGATGTCTACAAAGGAATTCTTTCGGATGGAACACTTGTGGCTGTAAAGAGACTTAAAGATGGCAATATCAGTGGAGGAGAGATACAATTTCAGACTGAAGTTGAAATGATCAGTTTGGCAGTGCACAGAAACCTTCTTAAATTGTATGGATTTTGTATGACAACATCAGAAAGGCTCTTAGTTTACCCTTACATGTCCAATGGCAGCGTCGCTTCACGTCTCAAGGCTAAGCCAGTGTTGGATTGGGGCACAAGAAAGCAAATTGCATTAGGAGCTGGAAGAGGACTATTATACCTTCATGAGCAATGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCAAATATATTACTTGATGATTATTGTGAAGCAGTAGTTGGAGATTTTGGTTTGGCAAAGCTTTTAGACCACAAAGATTCACATGTTACAACTGCAGTTAGGGGCACAGTAGGACATATAGCACCTGAGTATCTTTCCACAGGACAATCTTCTGAAAAGACTGATGTTTTTGGATTTGGCATTTTGCTTCTTGAGTTGATCACAGGTTTGAGGGCTCTAGAATTTGGAAAGGCAGCTAACCAAAAAGGAGTTATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTAGATTTACTTGTAGATAAGGATCTCAAGAACAACTATGACAAGATTGAGCTTGAAGAAATAGTTCAAGTTGCACTTTTATGTACACAATACCTTCCAGGCCACAGACCGAAAATGTCTGAAGTCGTACGCATGCTCGAAGGTGACGGTTTAGCTGAGAAATGGGAAGCTTCTCAACGAGCCGACAACTCTACCAAGTGCAAACCACATGAATTATCTTCGTCCGATCGGTATTCCGATCTTACCGATGATTCTTCATTGTTAATCCAAGCCATGGAGCTTTCAGGTCCAAGGTGA 1878 0.3887 MEKLREEAFLCFVTLFLFWSSTNALLSPKGINFEVQALMNIKGSLVDPHGILENWDGDAVDPCSWNMVTCSTENLVISLGIPSQNLSGTLSPSIGNLTNLQTIVLQNNNITGPIPSELGKLSMLQTLDISDNFFNGKIPPSLGYLRNLQYLRLNNNSFSGECPESLANMAQLTFLDLSFNNLSGSVLRILAKSFSIVGNPLVCAIGKETNCHGMKLMPMSMNLNNTNYALPSRRKKAHKMAIIFGLSLGCLCLLVLGFGLVLWRRHKHNRQAFFDVKDRHHEEVYLGNLKSFQLRELQIATHNFSNKNILGKGGFGDVYKGILSDGTLVAVKRLKDGNISGGEIQFQTEVEMISLAVHRNLLKLYGFCMTTSERLLVYPYMSNGSVASRLKAKPVLDWGTRKQIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGVMLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRADNSTKCKPHELSSSDRYSDLTDDSSLLIQAMELSGPR 625
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00642 625 SUPERFAMILY L domain-like 34 205 - -
Trre11g00642 625 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
Trre11g00642 625 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Trre11g00642 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Trre11g00642 625 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Trre11g00642 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 584 - -
Trre11g00642 625 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Trre11g00642 625 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Trre11g00642 625 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Trre11g00642 625 SMART serkin_6 304 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00642 625 ProSiteProfiles Protein kinase domain profile. 304 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00642 625 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515
Trre11g00642 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Trre11g00642 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Trre11g00642 625 MobiDBLite consensus disorder prediction 584 605 - -
Trre11g00642 625 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
Trre11g00642 625 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00642 625 MobiDBLite consensus disorder prediction 584 607 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre11g00642 Trre-Chr11 5152302 5156886 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00642 1 625 Receptor kinase-like Gene Family AT5G16000 75.158 0.0 970
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre11g00642 Pkinase 2.1e-43 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00642 - - gmx:100806650 1067.37