Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g00642 | ATGGAGAAGCTAAGAGAAGAAGCTTTTCTATGTTTTGTAACATTGTTCTTGTTTTGGAGTTCTACAAATGCTTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGAACATAAAAGGTTCTTTAGTTGATCCTCATGGAATTCTAGAAAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCCACTGAGAATCTTGTTATAAGCTTGGGCATTCCTAGTCAGAATTTGTCTGGTACATTATCTCCAAGCATAGGAAACTTAACCAATCTTCAAACTATAGTGTTGCAGAATAACAACATAACTGGACCAATTCCTTCAGAGCTAGGAAAACTTTCAATGCTTCAAACACTTGATATTTCTGATAACTTTTTCAATGGAAAAATTCCTCCTTCTCTTGGTTATCTAAGAAACCTTCAGTACTTGAGGCTTAATAATAACAGCTTTTCTGGTGAATGTCCTGAGTCACTTGCTAACATGGCACAACTTACTTTCCTTGACTTATCATTCAACAATCTTAGTGGCTCCGTGCTTCGAATTTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTGGTGTGTGCCATAGGAAAAGAAACAAATTGCCATGGGATGAAACTCATGCCTATGTCAATGAACTTAAACAATACTAACTATGCATTACCATCAAGGAGGAAAAAAGCTCACAAAATGGCCATTATCTTTGGTTTGAGTCTTGGATGTCTTTGCTTGTTAGTCCTTGGCTTCGGATTGGTACTATGGAGAAGACATAAGCATAATCGACAAGCATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACTTAGGAAACTTGAAAAGCTTCCAATTAAGAGAACTTCAGATTGCTACTCACAACTTCAGCAACAAAAACATATTGGGAAAAGGTGGTTTCGGCGATGTCTACAAAGGAATTCTTTCGGATGGAACACTTGTGGCTGTAAAGAGACTTAAAGATGGCAATATCAGTGGAGGAGAGATACAATTTCAGACTGAAGTTGAAATGATCAGTTTGGCAGTGCACAGAAACCTTCTTAAATTGTATGGATTTTGTATGACAACATCAGAAAGGCTCTTAGTTTACCCTTACATGTCCAATGGCAGCGTCGCTTCACGTCTCAAGGCTAAGCCAGTGTTGGATTGGGGCACAAGAAAGCAAATTGCATTAGGAGCTGGAAGAGGACTATTATACCTTCATGAGCAATGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCAAATATATTACTTGATGATTATTGTGAAGCAGTAGTTGGAGATTTTGGTTTGGCAAAGCTTTTAGACCACAAAGATTCACATGTTACAACTGCAGTTAGGGGCACAGTAGGACATATAGCACCTGAGTATCTTTCCACAGGACAATCTTCTGAAAAGACTGATGTTTTTGGATTTGGCATTTTGCTTCTTGAGTTGATCACAGGTTTGAGGGCTCTAGAATTTGGAAAGGCAGCTAACCAAAAAGGAGTTATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTAGATTTACTTGTAGATAAGGATCTCAAGAACAACTATGACAAGATTGAGCTTGAAGAAATAGTTCAAGTTGCACTTTTATGTACACAATACCTTCCAGGCCACAGACCGAAAATGTCTGAAGTCGTACGCATGCTCGAAGGTGACGGTTTAGCTGAGAAATGGGAAGCTTCTCAACGAGCCGACAACTCTACCAAGTGCAAACCACATGAATTATCTTCGTCCGATCGGTATTCCGATCTTACCGATGATTCTTCATTGTTAATCCAAGCCATGGAGCTTTCAGGTCCAAGGTGA | 1878 | 0.3887 | MEKLREEAFLCFVTLFLFWSSTNALLSPKGINFEVQALMNIKGSLVDPHGILENWDGDAVDPCSWNMVTCSTENLVISLGIPSQNLSGTLSPSIGNLTNLQTIVLQNNNITGPIPSELGKLSMLQTLDISDNFFNGKIPPSLGYLRNLQYLRLNNNSFSGECPESLANMAQLTFLDLSFNNLSGSVLRILAKSFSIVGNPLVCAIGKETNCHGMKLMPMSMNLNNTNYALPSRRKKAHKMAIIFGLSLGCLCLLVLGFGLVLWRRHKHNRQAFFDVKDRHHEEVYLGNLKSFQLRELQIATHNFSNKNILGKGGFGDVYKGILSDGTLVAVKRLKDGNISGGEIQFQTEVEMISLAVHRNLLKLYGFCMTTSERLLVYPYMSNGSVASRLKAKPVLDWGTRKQIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGVMLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRADNSTKCKPHELSSSDRYSDLTDDSSLLIQAMELSGPR | 625 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g00642 | 625 | SUPERFAMILY | L domain-like | 34 | 205 | - | - | |
Trre11g00642 | 625 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 574 | IPR011009 | - | |
Trre11g00642 | 625 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 381 | 593 | - | - | |
Trre11g00642 | 625 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 31 | 213 | - | - | |
Trre11g00642 | 625 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 380 | - | - | |
Trre11g00642 | 625 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 12 | 584 | - | - | |
Trre11g00642 | 625 | Gene3D | Ribonuclease Inhibitor | 31 | 213 | IPR032675 | - | |
Trre11g00642 | 625 | FunFam | Somatic embryogenesis receptor kinase 1 | 273 | 380 | - | - | |
Trre11g00642 | 625 | ProSitePatterns | Protein kinases ATP-binding region signature. | 310 | 332 | IPR017441 | GO:0005524 | |
Trre11g00642 | 625 | SMART | serkin_6 | 304 | 573 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre11g00642 | 625 | ProSiteProfiles | Protein kinase domain profile. | 304 | 583 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre11g00642 | 625 | Pfam | Leucine Rich Repeat | 124 | 143 | IPR001611 | GO:0005515 | |
Trre11g00642 | 625 | Pfam | Leucine rich repeat N-terminal domain | 34 | 71 | IPR013210 | - | |
Trre11g00642 | 625 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 423 | 435 | IPR008271 | GO:0004672|GO:0006468 | |
Trre11g00642 | 625 | MobiDBLite | consensus disorder prediction | 584 | 605 | - | - | |
Trre11g00642 | 625 | Gene3D | Transferase(Phosphotransferase) domain 1 | 381 | 593 | - | - | |
Trre11g00642 | 625 | Pfam | Protein kinase domain | 305 | 570 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre11g00642 | 625 | MobiDBLite | consensus disorder prediction | 584 | 607 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g00642 | Trre-Chr11 | 5152302 | 5156886 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g00642 | 1 | 625 | Receptor kinase-like Gene Family | AT5G16000 | 75.158 | 0.0 | 970 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-II | Trre11g00642 | Pkinase | 2.1e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g00642 | - | - | gmx:100806650 | 1067.37 |