Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00633 ATGATTCTTAAAGTCTTTCTTGTTTTAATCCATGCTCCAAATGTTTATTCTCCGACTTTTCATTCGGATGTTTATTCTCCAAATGTTCTAATCCTTTTGGTTTGTGCTACTCTTTCACTTGCCTTTGGAATCAAGGAACATGGAATCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTTCTAGCTGTTTTCATTGTTATTTCAATGTCATCAATAAGCAATTTCAAACAGAACAAACAATTTGATAAATTGTCTCAAGTCAGCAATGATATTCAAATTGATTTGGTTCGTAGCGGGCGCCGACAAAAGGTATCCATCTTTGACATTGTTGTTGGTGATGTTGTTTGTTTGAAGATCGGTGATCAAGTACCGGCTGATGGATTGTTTGTACATGGACATTCATTGAGAGTCGATGAACTGAGCATGACCGGTGAGAGCGATCATGTAGAGATTAATAAAGACCATCATCCATTTTTGTTTTCCGGAACAAAAGTTGCTGATGGTTATGCGAAAATGCTTGTTACATCGGTCGGTATGAACACAACTTGGGGACAAATGATGAGTTCAATAAGCAATGATATCGACGAAGAAACACCTTTGCAGACAAGGTTGAACAAGTTGACATCATCAATCGGAAAGGTTGGTTTGGTTGTGGCGTTTCTAGTCCTTGTTGTTCTGTTGATTCGATATTTCACCGGGAACACAAAGACTGATAATGGTGTTAAAGAGTTTAACGGACGGAAGACTAGTTTTGATGATGTGATGAATGCAATTATTGGAATAATTGCAGATGCTGTTACTATTGTCGTTGTTGCTATCCCGGAGGGTTTGCCATTAGCAGTGACATTGACACTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTTAGAAAACTTTCTGCTTGTGAGACTATGGGATCTACTACTATTATCTGCACTGACAAAACAGGTACACTGACTTTGAATCAGATGAAGGTGACAAAGTTTTGGCTTGGTCTAGAGCCTTTGGAAAATGATGTATATTCAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACGACCGCTGGCGTTCACGAATCTAAATCTGGTTTTGATTCAAAATTCGAGGTTTCCGGTAGCCCAACTGAAAAGGCGATATTATCCTGCGCTGTTTTGGAATTGAATATGGATATGGAAAATTTGTCAAAAAGTTGTTCTATTATTCAAGTTGAGACATTCAACTCAAAGAAGAAGAGAAGCGGTGTTTTATTGAGAATAAATGTTGACAACAAAGTTAATGCACATTGGAAAGGAGCAGCAGAGATGGTATTAAGAATGTGTTCAAGATACTATGATGGTTATGGAAATGTGAAAGATCTTGACAATGAAACCATGTCGAAATTTGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTGGTTGTATTGCTTTAGCATACGCAGAAGTCTCTGACGAAGATCTACGAGGTGAAGTTGACAACAAGAAGATTGTGGTAAAAGATAATGGTTTAACATTGATAGGACTTATTGGTATTAAGGATCCGTGTCGTCCAGGAGTGAAAACGACGGTGGAAGCTTGCCAACATGCCGGCGTGAATGTCAAAATGATTACAGGTGACAATGTTTTCACTGCAAAAGCCATAGCATTCGAATGTGGAATTCTTCAACCTAATCAAGACACAGGCGAAACTGTGGTAGAAGGTGAACAATTTCGTAATTTTTCACCTGAAGAGAGGTTAGAGAAAGTTGGCAAAATATCTGTAATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTGCAATGCTTAAAGCAAAAAGGACATGTAGTTGCCGTTACCGGAGATGGAACAAACGATGCACCCGCATTGAAAGAAGCCGATATTGGTCTTTCGATGGGAATTCAAGGTACCGAAGTTGCGAAAGAGAGTTCGGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTCGCGGCGGTTTCAGCAGGTGAAGTTCCTTTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTTGCAACTGAAAAACCAACTAAGGAATTAATGGATCAAAAACCAGTTGGTAGAACAAAACCTCTTATTACTAACATCATGTGGAGGAATCTTTTGTCACAAGCTTTGTACCAAATAGTAATTTTGTTGACACTTCAATTCAAAGGTGAAGCTATTTTTGATGTGACATCAAAGGTAAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTTAACGAGTTTAATGCAAGGAAGTTGGAAAAGAAGAATGTGTTTGAAGGGATATTTAAGAGTAAGTTGTTTTTGGGAATTATTGGTGTGACATTGGTGCTTCAAGTTGTTATGGTTGAGTTTTTGAAGAAGTTTGCTGATACAGAGAGATTGAATTGGAGAGAATGGATTATTTGTATTGGTTTTGGTGCTGTTTCTTGGCCAATTGGTTTTGTTGTGAAGATGATACCTGTCTCAGATAAACCATTACTTGATTTTTTGAGTATGAAGAAGACTTAG 2688 0.3713 MILKVFLVLIHAPNVYSPTFHSDVYSPNVLILLVCATLSLAFGIKEHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFDIVVGDVVCLKIGDQVPADGLFVHGHSLRVDELSMTGESDHVEINKDHHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDIDEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKTDNGVKEFNGRKTSFDDVMNAIIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSTTIICTDKTGTLTLNQMKVTKFWLGLEPLENDVYSNVDPFVLQLIKEGVAHNTTAGVHESKSGFDSKFEVSGSPTEKAILSCAVLELNMDMENLSKSCSIIQVETFNSKKKRSGVLLRINVDNKVNAHWKGAAEMVLRMCSRYYDGYGNVKDLDNETMSKFESIIQGMAASSLGCIALAYAEVSDEDLRGEVDNKKIVVKDNGLTLIGLIGIKDPCRPGVKTTVEACQHAGVNVKMITGDNVFTAKAIAFECGILQPNQDTGETVVEGEQFRNFSPEERLEKVGKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQALYQIVILLTLQFKGEAIFDVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFLGIIGVTLVLQVVMVEFLKKFADTERLNWREWIICIGFGAVSWPIGFVVKMIPVSDKPLLDFLSMKKT 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00633 895 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 881 IPR023298 -
Trre11g00633 895 NCBIfam HAD-IC family P-type ATPase 595 705 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g00633 895 NCBIfam HAD-IC family P-type ATPase 258 337 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g00633 895 SFLD Haloacid Dehalogenase 297 677 - -
Trre11g00633 895 Pfam haloacid dehalogenase-like hydrolase 313 638 - -
Trre11g00633 895 SUPERFAMILY Calcium ATPase, transduction domain A 93 189 IPR008250 -
Trre11g00633 895 ProSitePatterns E1-E2 ATPases phosphorylation site. 317 323 IPR018303 -
Trre11g00633 895 Gene3D - 325 525 IPR023299 GO:0000166
Trre11g00633 895 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 322 522 IPR023299 GO:0000166
Trre11g00633 895 SUPERFAMILY HAD-like 313 729 IPR036412 -
Trre11g00633 895 Gene3D - 78 191 - -
Trre11g00633 895 FunFam Calcium-transporting ATPase 63 191 - -
Trre11g00633 895 FunFam Calcium-transporting ATPase 519 669 - -
Trre11g00633 895 FunFam Calcium-transporting ATPase 325 525 - -
Trre11g00633 895 Pfam E1-E2 ATPase 92 293 - -
Trre11g00633 895 PRINTS H+-transporting ATPase (proton pump) signature 624 640 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g00633 895 PRINTS H+-transporting ATPase (proton pump) signature 656 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g00633 895 PRINTS H+-transporting ATPase (proton pump) signature 471 489 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g00633 895 NCBIfam calcium-translocating P-type ATPase, PMCA-type 28 881 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre11g00633 895 Gene3D - 312 669 IPR023214 -
Trre11g00633 895 Pfam Cation transporting ATPase, C-terminus 709 879 IPR006068 -
Trre11g00633 895 SFLD p-type atpase 297 677 IPR044492 -
Trre11g00633 895 Gene3D - 29 877 - -
Trre11g00633 895 PRINTS P-type cation-transporting ATPase superfamily signature 624 643 - -
Trre11g00633 895 PRINTS P-type cation-transporting ATPase superfamily signature 138 152 - -
Trre11g00633 895 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Trre11g00633 895 PRINTS P-type cation-transporting ATPase superfamily signature 518 529 - -
Trre11g00633 895 PRINTS P-type cation-transporting ATPase superfamily signature 648 660 - -
Trre11g00633 895 PRINTS P-type cation-transporting ATPase superfamily signature 540 550 - -
Trre11g00633 895 PANTHER CATION TRANSPORTING ATPASE 26 882 - -
Trre11g00633 895 FunFam Calcium-transporting ATPase 641 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00633 Trre-Chr11 5078104 5081054 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00633 29 894 Primary Pumps ATPases AT3G22910 70.230 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00633 K01537 - gmx:100793918 1405.96