Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00629 ATGCAAACAAGAGAAGTAACAACAGGACTCAATTACATGCTCCCATCAAACACATCACCATATCTACAAAATTATAACAACATGATTCAAAATAACAACATTTCCTCATATCAACTCCAAAAATTCTCAAACCAATTATTTGGTAATTACCAAAACACCCCTAATCAATTTCATGACTTCAATTATAGTCCTCAATCATCATGCATAAGTAGCAACTCAACTTCTGATGAAGCAGATGAACAAAACCTTAGTCTCATCAATGAGAGGAAACATCGAAGGATGATATCGAACCGAGAGTCTGCGCGCCGGTCGCGCATGAGGAAGCAGAAACACCTTGATGAACTTTGGTCACAAGTTCTTTGGTTGAGGAATGAAAATCACCAACTTATAGAGAAACTTAACCATGTTTCAGAAAATCATGATCAAGTTGTTCAAGAGAATGGTAAGCTGAAAGAAGAAGCTTTGGAACTTAGACAAATGATAAGAGATATGCAAATTCATAGTCCTTTAATCCCTTCTTTTAGTCCTTTGGATGATACATATCTTAGAGATGATTCTTCAAACAATTCCATCTCAAGTTCCATGGATCTTCTTGGCTAG 600 0.3617 MQTREVTTGLNYMLPSNTSPYLQNYNNMIQNNNISSYQLQKFSNQLFGNYQNTPNQFHDFNYSPQSSCISSNSTSDEADEQNLSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVLWLRNENHQLIEKLNHVSENHDQVVQENGKLKEEALELRQMIRDMQIHSPLIPSFSPLDDTYLRDDSSNNSISSSMDLLG 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00629 199 CDD bZIP_plant_GBF1 90 141 IPR045314 GO:0003700|GO:0006355
Trre11g00629 199 Gene3D - 87 142 - -
Trre11g00629 199 FunFam BZIP transcription factor 87 138 - -
Trre11g00629 199 SMART brlzneu 85 149 IPR004827 GO:0003700|GO:0006355
Trre11g00629 199 SUPERFAMILY Leucine zipper domain 89 139 IPR046347 GO:0003700|GO:0006355
Trre11g00629 199 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700|GO:0006355
Trre11g00629 199 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 10 170 IPR044521 -
Trre11g00629 199 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700|GO:0006355
Trre11g00629 199 Pfam bZIP transcription factor 89 146 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00629 Trre-Chr11 5036907 5037506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00629 64 170 bZIP Transcription Factor Family AT3G30530 72.727 1.52e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre11g00629 bZIP_1 4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00629 - - aprc:113867865 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00629 11 5036907 5037506 Trre13g00379 13 2940550 2941158 PCT