Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00628 ATGTCTCGTTATCCTTCTTCAAATCCCTTCGCAACGATTCACTCAGATTCCGATTCTGACACCGACTCACTGAGTCTATTCGTCACCGATCTCTTCGAAAATCGTTCCCCTTCCGATCCTGCTTGTCCTTGGGAAGATGAAGACGATCCAATATATCTAAACCCTTTCTCCGTTCTCGCTTGCGATGTTCATCAAGTGGGTGGTGGTGATGATGGTTCTAGTGGGCTTAGGGTTATTGAATTTGGTACTGATTCGGAATCGAGTGGGAATGATGATGAATTTGATTATAGGGGAGAGAATGACGATGGTGATGAGAGGGTTGGTGGAATTTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGTAGAGGAGAGAGCGAATGAGGATGCGAATGAGATTGGTGATTCTTCTAGTTTGTTGATTGATGACGAGGTTGATGTTGATGTTGATGTTGAGGATGATCGGTCAGTGGCATCGGGGTTTGAAGAGGAAGAGGAACCGGGCGAAGAGGCGTTGAGGTATTTGGAGTGGGAGATTCTATTGGCTTTTAACAATTTAGAGAGGAGTGGTGGATTGGAACATGAAGATGAGAGTCTTAATAATTTGTATTTAGCTGTTCACGATAGTATTATATCGGGAAACAATGATTATGATATTCTTTTTGGACAGTTAATGGAGAATGAGAGTAGTTTGAAGGGTAGTCCACCAGCGGCGAAGAGTTTCGTGGAGAATCTTCCTTTGGTGGAACTGACGGAGGAGGAGTTGAAAAAGAATGATGTTGTGTGTGCTGTTTGTAAAGATGAGGTAACGGTGGAAGAGAAGGTGAGGAAGCTACCTTGCTCACATTGTTACCATGGAGATTGTATTTTGCCGTGGTTGAGTATTCGCAACACGTGTCCTGTTTGTCGGTTTGAGTTGCCAACGGATGATGCTGATTACGAGCAGAGTAAGATTCGTAGTGTGGCTCGTGATCTGTTGGAGTTTGCAACATAG 1020 0.4382 MSRYPSSNPFATIHSDSDSDTDSLSLFVTDLFENRSPSDPACPWEDEDDPIYLNPFSVLACDVHQVGGGDDGSSGLRVIEFGTDSESSGNDDEFDYRGENDDGDERVGGICWDSLCLEDHRSILNDWEEVVEERANEDANEIGDSSSLLIDDEVDVDVDVEDDRSVASGFEEEEEPGEEALRYLEWEILLAFNNLERSGGLEHEDESLNNLYLAVHDSIISGNNDYDILFGQLMENESSLKGSPPAAKSFVENLPLVELTEEELKKNDVVCAVCKDEVTVEEKVRKLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDADYEQSKIRSVARDLLEFAT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00628 339 FunFam E3 ubiquitin-protein ligase RING1-like 232 318 - -
Trre11g00628 339 Pfam Ring finger domain 271 312 IPR001841 -
Trre11g00628 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 160 316 - -
Trre11g00628 339 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g00628 339 MobiDBLite consensus disorder prediction 81 101 - -
Trre11g00628 339 SUPERFAMILY RING/U-box 258 318 - -
Trre11g00628 339 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
Trre11g00628 339 SMART ring_2 271 311 IPR001841 -
Trre11g00628 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00628 Trre-Chr11 5013329 5014486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00628 58 326 C3H Transcription Factor Family AT3G02340 40.484 3.40e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00628 - - gmx:100812037 308.916