Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g00613 | ATGGTTCGTCAAACTGATTTAGTTATCATTGGTATCTGTGTTGGTTTGGCCCTTGGAATTCTGATTTCTTGCCTCATATTTTTCGGCATAAGGTGGTGCAAGAAACGTTCTCATCTTACTCGATCTGCTAGTGAGCCTAGTTTAACAACTCTCCCAATAAGAACAAATGGATTTGAAGCAAGTACTGAATTTAGTGCATCCATCACTAGTTCCATAGGCACATCAAGGTCAGATAATCAACAGAAAAATTCCCATTTCACTTGGTGGAATCATCAAAACAAAGACCGGTTTGCTTCAGCATCAGGCATTCTAAAGTATTCGTACAAAGAACTTCAGAAGGCCACACAAAATTTCACGACTACCTTGGGACAAGGATCATATGGAACGGTTTATAAAGCCACAATATCTACCGGAGAGGTGGTAGCTGTGAAGGTGCTAGCAAACAATTCCAAACAAGGGGAGAGAGAATTCCAAACAGAGGTTTCTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGCTTGGATATTGTGTAGATAAAGGACAACACATACTGGTTTATCAGTACATGAGCAATGGAAGTTTAGCAAATATTTTATATGGTGAAGAAAAGAAGTTAAGTTGGGATGACAGGCTGCAAATTGCTGTTGATATTTCACATGGAATCGAGTATCTTCATGAAGGAGCAGTTCCACCCGTCATACATCGTGATTTGAAGTCTCCCAACATATTGCTAGACGACTCTATGAGAGCTAAGGTTGCTGATTTTGGCCTCTCAAAAGAAGAGAGATTCGATGGCCGAAATTCCGGTCTTAAAGGTACATATGGTTACATGGATCCGGCTTACATTTCGACAAGCAAATTAACAACAAAGAGTGACATATACAGTTTTGGTATCATACTTTTTGAGCTCATCACTGCCATTCATCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGAACATGATGGTATAGATGAGATACTTGACAAGCAACTTGTTGGAAAATGCAATGTTTTAGAAGTAAGACAGCTTGCTAAAATTGCACACAAATGCTTACACAAATCACCTAAGAAAAGACCTTCTATAGGTGAAGTTTCACAAAGTATATCAAGAATAAAGCAAAGACGATTGCGCCATGTGATGGAAGATAACTTGTCATTTGCAAATAGTAATAACTTTTCAAGAGCTGCGAGTCGATTAGAAGATCGACAAGTTGAATTGAGTAGGATAGTTACAATGACCATCAAGGAAAATTTATGA | 1278 | 0.385 | MVRQTDLVIIGICVGLALGILISCLIFFGIRWCKKRSHLTRSASEPSLTTLPIRTNGFEASTEFSASITSSIGTSRSDNQQKNSHFTWWNHQNKDRFASASGILKYSYKELQKATQNFTTTLGQGSYGTVYKATISTGEVVAVKVLANNSKQGEREFQTEVSLLGRLHHRNLVNLLGYCVDKGQHILVYQYMSNGSLANILYGEEKKLSWDDRLQIAVDISHGIEYLHEGAVPPVIHRDLKSPNILLDDSMRAKVADFGLSKEERFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIILFELITAIHPHQNLMEYINLAAMEHDGIDEILDKQLVGKCNVLEVRQLAKIAHKCLHKSPKKRPSIGEVSQSISRIKQRRLRHVMEDNLSFANSNNFSRAASRLEDRQVELSRIVTMTIKENL | 425 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g00613 | 425 | ProSitePatterns | Protein kinases ATP-binding region signature. | 122 | 144 | IPR017441 | GO:0005524 | |
Trre11g00613 | 425 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 400 | - | - | |
Trre11g00613 | 425 | ProSiteProfiles | Protein kinase domain profile. | 116 | 383 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre11g00613 | 425 | SUPERFAMILY | Protein kinase-like (PK-like) | 87 | 373 | IPR011009 | - | |
Trre11g00613 | 425 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 7 | 387 | - | - | |
Trre11g00613 | 425 | Gene3D | Phosphorylase Kinase; domain 1 | 77 | 191 | - | - | |
Trre11g00613 | 425 | SMART | serkin_6 | 116 | 384 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre11g00613 | 425 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 24 | - | - | |
Trre11g00613 | 425 | Pfam | Protein tyrosine and serine/threonine kinase | 118 | 373 | IPR001245 | GO:0004672|GO:0006468 | |
Trre11g00613 | 425 | FunFam | Calcium/calmodulin-regulated receptor-like kinase 2 | 192 | 402 | - | - | |
Trre11g00613 | 425 | FunFam | Calcium/calmodulin-regulated receptor-like kinase 1 | 90 | 191 | - | - | |
Trre11g00613 | 425 | CDD | STKc_IRAK | 122 | 378 | - | - | |
Trre11g00613 | 425 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 235 | 247 | IPR008271 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g00613 | Trre-Chr11 | 4858395 | 4861918 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g00613 | 8 | 380 | Receptor kinase-like Gene Family | AT1G79620 | 38.205 | 2.11e-72 | 243 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-I-2 | Trre11g00613 | PK_Tyr_Ser-Thr | 2.2e-52 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g00613 | - | - | gmx:100819995 | 720.694 |