Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00592 ATGAGGCTTTTTATTTCAACTCTTTGTGTTCTTGTGCTATTCTCTTGTGCAGTTGCTTATGATCCTTTGGATCCAAATGGAAACATAACAATCAAATGGGATGTTATTTCATGGACACCAGATGGTTATGTGGCGTCAGTAACAATCAACAATTTCCAAAAGTTTCGACAAATAAAGAATCCGGGATGGACATTAGGATGGACTTGGGCTAAGAAAGAAGTTATATGGGTAATGTTAGGAGCTCAAGCAACGGAACAAGGTGATTGTTCTAGATTCAAAGGAAGCATACCTCATTCCTGCAAGAAAATCCCTGCAGTTGTAGACCTTCTCCCAGGTACACCTTACAATCAGCAAGTAGCAAACTGTTGTAAAGGTGGTGTGGTTGCAGCATTCGGACAATCAGCTTTTCAAATTACTGTAGGACAAGCTGGTAACACTAACAAAACAGTTAGAATTCCACAGAATTTCACTCTTTTGGCTCCACGAGCTCGATATACTTGTCGCCCTGCAAAGATTGTTCCTTCCACCATTTTTATTACTCCTGATAGGCGCCGCATGACTCGAGCTTTCATGACATGGGATACTATCTGCAAATACTCAAAAGCTTAA 609 0.4056 MRLFISTLCVLVLFSCAVAYDPLDPNGNITIKWDVISWTPDGYVASVTINNFQKFRQIKNPGWTLGWTWAKKEVIWVMLGAQATEQGDCSRFKGSIPHSCKKIPAVVDLLPGTPYNQQVANCCKGGVVAAFGQSAFQITVGQAGNTNKTVRIPQNFTLLAPRARYTCRPAKIVPSTIFITPDRRRMTRAFMTWDTICKYSKA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00592 202 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Trre11g00592 202 Pfam COBRA-like protein 43 200 IPR006918 GO:0010215|GO:0016020
Trre11g00592 202 PANTHER PROTEIN COBRA 7 201 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00592 Trre-Chr11 4685046 4686790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00592 17 201 COBRA Gene Family AT5G15630 69.634 1.27e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00592 - - gmx:100798678 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00592 11 4685046 4686790 Trre13g00333 13 2541788 2545192 PCT
Trre13g00334 13 2545989 2548662 Trre11g00592 11 4685046 4686790 PCT