LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00580	ATGAAACCATTAATCAACTTCAAAACCTTCATCACAACTCTCATCTACTTTTCCATCTCCCTCTATAACCTTCAAGCCTATGACCCAATTGACCGTTTTACCCTCAACTGTGGCACAGAAGGAAACTCTAGTGATGGACAAAGAACATGGACAGGAGACACAAACTCAAAACTTTTGTCATCATCTCAAAACAACCCAACAACAACAGTTTCTGTTCCAACAACAACACAAAATCCTTCAATCAACAAAATTCCATATTCAACAGCACGTTTATCACACTCGATATTCAACTACTCTTTTCCCGTCGCTACAGGTCCTAAATTCCTCCGTCTCTTTTTCTACCCTTCTATTTATACCAACGGTTTTAACCGTCACGACGCTTCTTTCACTGTTATTTCCAACGGTTTCACACTTCTTAAGGATTTTAATGCTTCATTAAATGCTGATGTTGAAGGTGTTGATATTTTAGTGAAAGAATATGTTATTAACGTTGGTGAGGATCAAAGGCTTAATTTGAGTTTGATTCCAAGTAATGGAAATTCTAATAATTATGCTTTCATAAATGGAATTGAAGTCATATCCATGCCTAATGATCTCTATTATACACCACCTGAAAATAATGGATTTCCACTTGTGGGGACCACCATCTCACAGACATATACTATTCCAACCAACGTTGCACTACAGACAGATTACAGGATCAAAGTTGGACCGCAACCAAACTCACCAGACATTAAAGACACAGGCATGCTCAGAAACTGGAACATCAACGACACAGACTATTTAAACACTCCAACATCACGTGACTTTGTCTCAGGAGACGTAAAACGTTCGAGTAATATCACCGTAACCCCGGATTATATGGCACCAAAAGAACTCTTCAAATCATCACGTGACTTAGGCACAAACTCCACTCTCAACCGACTCTTAAACCTGACTTGGGAATTCCCCGTTGATTCTGGCTTCTTTTACTTGATCAGGCTTCACTTTTGTGAACTCGACCCTAGTATAACCCAAGCGGGGGATAGAGTCTTCACAATCTATTTACAAGGACAAATGGCGTTAGAACAAGCTGATGTTATGAAATGGACCGAAAATCAAAAAGGCGTCGCTGTGCAACGAAACTACGCCATTTCAATTCCAAAGAGTAATAATAACAAGAAAGTAAATCTCTCTCTTCAAATGCATCCTTTTGGTAATGGTGATAGTCGAGATACCGTATACAGTGATCCGTTTTTAAATGGACTTGAAATTTTCAAAATTAGTGATAACAGTTTGAAGAATCTAGCTGGACCCAACCCAAACCCGATTCAGAATCCAAATAACCCGACTTTGGTTCGAAATAACAAGAAAAGCATAAGTGGAACGACACTAATTGGTGTTGTTTTGGGAGTTGTATTCGGTGTCATCTTAGTTGTCATTGTCGTTTTCTTCGTTTTTAGAAGTAAAAGGAAAACCAAAGGGGAAATGGCTACAACGATAAAAGAATCAAAGTCTTCTGCGACTTCGAAGTGGGGTCCATTGTCGTTTTCAACGACGAAATCAAGCACACAAAACTCACTGCCGTCAGATCTCTGTCGTAGTTTTTCTCTTATCGAGATACGTGCTGCCACGAATAACTTTGATGAACTCTTCATAGTTGGCGTTGGAGGATTCGGCCACGTGTACAAAGGCTACATTGACAATGGTTCAACACCGGTCGCGATCAAGAGACTCAAACCGGGCTCACAACAAGGTGAAAATGAGTTCATCAATGAGATTGACATGCTCTCGAAGCTTCGTCATCTTCACCTTGTTTCTTTAATCGGTTACTGCAATGAGAATAATGAAATGATCATTGTTTATGATTACATGGAACGTGGAACTTTACGTGATCATCTCTATAACACGGAGAATCCTGCTTTATCATGGAAACAAAGGTTGCAGATTTCAATAGGTGCAGCTCGTGGGTTACATTACCTTCATACAGGTGCGAAACACACGATCATTCACCGTGATGTGAAAACGACGAATATTCTGTTAGATGAGAAATGGATGGCTAAGGTTTCTGATTTTGGGCTTTCGAGAATTGGGCCTACTGGTGTTACTAAGGCCCATGTTAGCACTGTTGTTAAAGGGAGTGTTGGTTATTTAGATCCCGAGTATTACAAACGACAACGTTTAACTGAGAAATCTGACGTGTACTCATTTGGTGTGGTTTTATTTGAGATACTATGTGCTCGACCGCCTCTAATTAGAACCGCGGAAAAGAAGCAAGTGTCACTTGCTGATTGGGGGAGGTATTGTTATAAAAACGGGACCCTAGGGAGTATTGTGGACCCTTCGGTGAAGTGGAGTATAGCGCCGGAGTGCTTGAGAAAATTCGGAGAGATTGCAGTCAGCTGTTTGTTGGACGATGGAACAATGAGACCATCGATGAACGATGTTGTTTGGATGTTGGAGTTTGCATTGCAGTTACAAGAGAGTTCAGAACAGCGCGAGGGTGTTGTTATTCCGCATACTCTTGGTCGGATTGATGATGTGGAAGGTGAGAAAAGAGGCGAAAATGATGATGTGTTTAGTAGTGGAACAAGTGTGGCACATGTTTCAGATTTTAATAAGAGTAGTGAAGTGAGTGCTAGTACTATGACTACTAGTAGTAGTGGAGATAATAGCTATGGTTATAATAAGGAAAGTGTTTTCTCTGAAATTGTGGATCCAAAAGCACGTTGA	2712	0.4038	MKPLINFKTFITTLIYFSISLYNLQAYDPIDRFTLNCGTEGNSSDGQRTWTGDTNSKLLSSSQNNPTTTVSVPTTTQNPSINKIPYSTARLSHSIFNYSFPVATGPKFLRLFFYPSIYTNGFNRHDASFTVISNGFTLLKDFNASLNADVEGVDILVKEYVINVGEDQRLNLSLIPSNGNSNNYAFINGIEVISMPNDLYYTPPENNGFPLVGTTISQTYTIPTNVALQTDYRIKVGPQPNSPDIKDTGMLRNWNINDTDYLNTPTSRDFVSGDVKRSSNITVTPDYMAPKELFKSSRDLGTNSTLNRLLNLTWEFPVDSGFFYLIRLHFCELDPSITQAGDRVFTIYLQGQMALEQADVMKWTENQKGVAVQRNYAISIPKSNNNKKVNLSLQMHPFGNGDSRDTVYSDPFLNGLEIFKISDNSLKNLAGPNPNPIQNPNNPTLVRNNKKSISGTTLIGVVLGVVFGVILVVIVVFFVFRSKRKTKGEMATTIKESKSSATSKWGPLSFSTTKSSTQNSLPSDLCRSFSLIEIRAATNNFDELFIVGVGGFGHVYKGYIDNGSTPVAIKRLKPGSQQGENEFINEIDMLSKLRHLHLVSLIGYCNENNEMIIVYDYMERGTLRDHLYNTENPALSWKQRLQISIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWMAKVSDFGLSRIGPTGVTKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPLIRTAEKKQVSLADWGRYCYKNGTLGSIVDPSVKWSIAPECLRKFGEIAVSCLLDDGTMRPSMNDVVWMLEFALQLQESSEQREGVVIPHTLGRIDDVEGEKRGENDDVFSSGTSVAHVSDFNKSSEVSASTMTTSSSGDNSYGYNKESVFSEIVDPKAR	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00580	903	FunFam	Receptor-like protein kinase FERONIA	513	617	-	-
	Trre11g00580	903	FunFam	Receptor-like protein kinase FERONIA	618	833	-	-
	Trre11g00580	903	Pfam	Malectin-like domain	35	421	IPR024788	-
	Trre11g00580	903	ProSiteProfiles	Protein kinase domain profile.	541	816	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00580	903	FunFam	FERONIA receptor-like kinase	32	196	-	-
	Trre11g00580	903	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	662	674	IPR008271	GO:0004672\|GO:0006468
	Trre11g00580	903	Gene3D	Transferase(Phosphotransferase) domain 1	618	833	-	-
	Trre11g00580	903	PANTHER	OS03G0124300 PROTEIN-RELATED	7	493	IPR046957	GO:0004672
	Trre11g00580	903	CDD	STKc_IRAK	547	814	-	-
	Trre11g00580	903	SMART	serkin_6	541	816	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre11g00580	903	FunFam	FERONIA receptor-like kinase	226	422	-	-
	Trre11g00580	903	Pfam	Protein tyrosine and serine/threonine kinase	547	810	IPR001245	GO:0004672\|GO:0006468
	Trre11g00580	903	ProSitePatterns	Protein kinases ATP-binding region signature.	547	570	IPR017441	GO:0005524
	Trre11g00580	903	SUPERFAMILY	Protein kinase-like (PK-like)	515	816	IPR011009	-
	Trre11g00580	903	MobiDBLite	consensus disorder prediction	866	888	-	-
	Trre11g00580	903	Gene3D	Phosphorylase Kinase; domain 1	505	617	-	-
	Trre11g00580	903	Gene3D	-	32	196	-	-
	Trre11g00580	903	Gene3D	-	227	422	-	-
	Trre11g00580	903	MobiDBLite	consensus disorder prediction	41	76	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00580	Trre-Chr11	4586801	4590640	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00580	18	903	Receptor kinase-like Gene Family	AT3G51550	47.921	0.0	763

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trre11g00580		Malectin_like	1.9e-32	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00580	-		-	psat:127121083	1431