Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00571 ATGTCTTCTTCCTTTAGCTTCCCCAATCTTCTAAATGACACATACACAAAGAATCCCTCGAAAGCAAGGATCCATGATGTGTTCTTAAGTTTCAGAGGCGAAGACACACGTGCTTCTTTCACTTCACATCTTAACACTTCTCTTCTAAATGCTGGAATTAAAGTTTTTAGGGACGATGATTCGCTTCAAAGAGGAGATATCATTTCAACATCAATAAATAGAGCAATTGAACAATCACAAATTGCTGTGATTATTTTCTCAAAGAACTATGCAGATTCGCGATGGTGTTTGGACGAGTTGGTGAAGATAATAGAATGTTCCAAATCCACAGGACTGGTTGTTTTGCCAGTGTTCTACGGTGTAGATCCTTCGGAAGTCCGTCACCAAAATGGTGAATTTGGTAGAGCATTTCAAAGTCTCTTGACTAGACTTTCAAATATGAAAGGACTTTTTAAAGTGTTAAACTTTAAATCCAGATCGCCGAATCTGGAGCAAGAACGGAATTGGACAGCGGCGCTTCATGAGGTAGCAGGGTTTGCAGGATTTGTAGTACTAAATTCCAGGAACGAAAGTGAGGCTATCAAGGATATTGTTGAAAAAGTTGTGCGCATGCTAAACAAGACAGACTTGTTTGTGGCTAATAATCCAGTGGGTGTTGAACCTCGAGTGGAAGATATGATTCAACTGCTAGAGAAAAAAATACCGCAACACACTAGTGAACTGCTACACTTTCAACCAATGCAAGCTCCGGTTCAACTGCTACAGTTCCAACCAATGCAAGCTCCACGTCAACTGCTACAGTTCCAACCAATGCAAGCTCCACGTCAACCGCTACAGTTCCAACCAATGCAAGCTCCAGTTCAACCCCTACAGTTCCAACCACTACAAGCTCCGGTTCAACTGCAACAGTTCCAACCAATGCAAGCTTGGTTTCAACCACAACAACAGCAACAAATGCAAGCTCCAAACCTACAATCAAAAGATGTTCTACTAATAGGGATGTGGGGTATGGGAGGCATTGGGAAAACCACCATTGCAAAAGCCATTTACAATAAAATTGGCTGCAACTTTGATGGTAGGAGCTTCCTTGCAAATATTAGGGAAGCTTGGGAGCAAAGTATTGGACAAGTTTCTTTACAAGAACGAATTCTCTTTGATATTTGCAAAGAAACTACGAACAAGATACAAAGCATTGAGGAAGGAAAAAATAAGTTAAAGGACAGACTCTTACATAAAAAAGTACTTCTTGTACTTGATGATGTGAATACATTGGATCAGTTGAATGCTTTGTGTGGAAGTCGTCAATGGTTTGGTTCGGGTAGTAGAATAATTATCACAACTAGAGATATGCATATTCTTAGAGGGAATAGAGTTGATCAACTATACACAATGAAAGAAATGAGTGAAAGTGAATCAATTGAGCTTTTTAGCTGGCATGCTTTCAAACAACCGAGCCCCAGTGTAGGTTTTGCTGAAATTTCAAGAAATGTAGTGGAATATTCCGGGGGATTGCCGCTAGCTCTTGAAGTCCTTGGGTCATATTTGTTTGATAGGGGGATAACAGAATGGGAGAGTGTATTGGAAAAACTCAAAAAAATTCCTAATGATCAAGTACAGAAGAAGTTAAAAATAAGCTATGATGCTTTAAATGATGACATTGAGAAAGAAATATTTCTTGACATAGCTTGTTTCTTTATAGGAATGGTCAGGAATGATGTTATACATATATTAAATGGGTGTGAATTTTATGGAGAAATCGGAATAAATGTTCTTGTGGAGCGTAGCCTTGTTACCATTGATGATAGGAACAGGCTTGGAATGCATGATTTGTTGCGTGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAAAGGATCCTGAAGAACGTAGCAGGTTATGGTTTAGTAAGGACGTGCTTAATGTGTTATCAGAACAAACGAAATTTGAGATGGTTTTCTTGGAATGGATTTCCCTTAACATGCATACCTACAAGCTTTTATCTAGGAAATTTAGTTTCCATCGAGTTAGTTAA 2034 0.3894 MSSSFSFPNLLNDTYTKNPSKARIHDVFLSFRGEDTRASFTSHLNTSLLNAGIKVFRDDDSLQRGDIISTSINRAIEQSQIAVIIFSKNYADSRWCLDELVKIIECSKSTGLVVLPVFYGVDPSEVRHQNGEFGRAFQSLLTRLSNMKGLFKVLNFKSRSPNLEQERNWTAALHEVAGFAGFVVLNSRNESEAIKDIVEKVVRMLNKTDLFVANNPVGVEPRVEDMIQLLEKKIPQHTSELLHFQPMQAPVQLLQFQPMQAPRQLLQFQPMQAPRQPLQFQPMQAPVQPLQFQPLQAPVQLQQFQPMQAWFQPQQQQQMQAPNLQSKDVLLIGMWGMGGIGKTTIAKAIYNKIGCNFDGRSFLANIREAWEQSIGQVSLQERILFDICKETTNKIQSIEEGKNKLKDRLLHKKVLLVLDDVNTLDQLNALCGSRQWFGSGSRIIITTRDMHILRGNRVDQLYTMKEMSESESIELFSWHAFKQPSPSVGFAEISRNVVEYSGGLPLALEVLGSYLFDRGITEWESVLEKLKKIPNDQVQKKLKISYDALNDDIEKEIFLDIACFFIGMVRNDVIHILNGCEFYGEIGINVLVERSLVTIDDRNRLGMHDLLRDMGREIIREKSPKDPEERSRLWFSKDVLNVLSEQTKFEMVFLEWISLNMHTYKLLSRKFSFHRVS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00571 677 PRINTS Disease resistance protein signature 408 422 - -
Trre11g00571 677 PRINTS Disease resistance protein signature 331 346 - -
Trre11g00571 677 PRINTS Disease resistance protein signature 501 515 - -
Trre11g00571 677 SUPERFAMILY "Winged helix" DNA-binding domain 537 643 IPR036390 -
Trre11g00571 677 Pfam TIR domain 25 208 IPR000157 GO:0007165
Trre11g00571 677 Gene3D - 302 460 IPR027417 -
Trre11g00571 677 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 207 - -
Trre11g00571 677 Gene3D - 466 550 IPR042197 -
Trre11g00571 677 SMART till_3 24 179 IPR000157 GO:0007165
Trre11g00571 677 Gene3D - 19 213 IPR035897 -
Trre11g00571 677 ProSiteProfiles TIR domain profile. 23 205 IPR000157 GO:0007165
Trre11g00571 677 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 667 IPR044974 GO:0006952
Trre11g00571 677 Pfam NB-ARC domain 327 549 IPR002182 GO:0043531
Trre11g00571 677 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 140 IPR035897 -
Trre11g00571 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 561 IPR027417 -
Trre11g00571 677 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00571 Trre-Chr11 4523873 4526728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00571 323 634 WRKY Transcription Factor Family AT5G45050 39.936 1.43e-58 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00571 - - cam:101494533 522.316