Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00562 ATGAAGAAGAATCCTTTGGAAGAATTAAGGATCCATGAAGTGTTCCTAAGTTTTAGAGGCAAAGACACTTGTGCTTCGTTCACTTCACATCTCTACGCTTCCCTTCAAAACGCCAAAATTAATGTTTACGGGGATGACTGTGCGCTTCCAAAGGGAGACGACATTCCAACATCACTAAAACGAACAATCAAACAGTCTCGAGTTTCTATTATTGTTTTCTCAAAGAACTATGCGGAATCAAGTTGGTGTATGGATGAGATGTTGGAAATCATGGAGTGTCACAAAACCATAGGCCATGTGGTTTTGTTGGTGTTCTACAATGTAGATCCATCGGAAGTATGTCATCAAATTGGTGAGTTTGGAATAGCATTTCAAAATCTTTTGAGAAAGATTTCAAAGAGGGAACACAAGTTGCTTTTAGGGAATAAGAATTACATATTGCAGCTTTGTCAGTATTTGGAGCAAACATGGAGACCCACGCTTCGTAAGGCAGCTTGCCTTGTACGACTTGTAGTCCTAAACTCCAAGAATGAAAGCGAGGCTATTAAAGATATTGTTGAAAATATTACACAATTGCTTGACAAGACAGACTTGTTTATTGCTAATAATCCAGTGGGGATTGATTCTCGAGTGCGAGATATGATTGAATTGCTTGACACTCAGCAATCAAATGATGTTCTACTACTAGGGATGTGGGGTATGGGAGGTATTGGTAAAACTACCATTGCGAAAGCCATTTATAATAAAATTGGCTGCAATTTTGAAGGTAGAAGCTTCCTAGTAAATATTAGGGAAGTTTGGAAACAGAATGCTGGACAAGTGAATTTACAAGAACAAATATTATTTGATATATGTAAAGAAATGACAACCAAGATACATAGCATTGAATCGGGAAATATTATATTAAGGAATAGACTATGTCATAAAAAAGTACTTCTCGTGCTTGATGATGTGAGTACATTGGATCAACTGAATTCTTTGTGTGGAAGTCGCAAATGGTTTGGTTCTGGAAGTAGAATTATAATCACAACCAGAGATATGCATATACTTAGAGGCAATAGGGTTGATCAAGTATACAAAATGAAAGAAATGGATGAAAGTGAATCAATTGAGCTTTTTAGTTGGCATGCATTCAAGCAATCAAGTCCTACAAAAGATTTTGTTGCGATTTCCAGAAATGTAGTTGAGTATTCTGGGGGATTGCCGCTAGCTCTAGAAGTCATTGGATCATATTTGTTTGACAGGGGGGAAACGGAGTGGGAAAGTGTATTAGAAAAACTCAAAATGATTCCCAATGATCAAGTACATAATAAATTAAAAATAAGCTATGATGGTTTAAATGATGATACTGAGAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAAAGATGTTATACATATATTAAATGGCTCTGAACTTTATCCAGAAATTGGAATACATGTCCTTGTTGAACGAAGCCTTGTAACTGTGGATGAAAGGAATAAAATTGGAATGCATGATTTGTTGCGAGATATGGGAAGAGAAATCGTTCGTGAGAAATCACCAAAGGATCCTGAGGAGCGCAGCAGATTGTGGTTTAATAAGGATGTGCTTGATGTATTGTCAGAACAAACAGGAACAAAAGTTGTTGAGGGTCTAGCTCTGAAGTTGCCAAGAGAGAATGCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGATGGTGTACAACTTGATGGAAATTTTGAATATCTTTCAAGAAATTTGAGATGGCTGTCTTGGAATGCATTTCCTTTCACATGCATACCTGCAGAGTTTTATCAAGAAAATTTAGTCGCCATTGAGTTAGAAAATAGCAATGTTAAAGTTGTGTGGAAAGACACCCAGAAGATGGAGAAACTAAAAATTCTCAATCTCAGTCATTCTCATTATCTCACACGAAGCCCTGACTTTTCAAACATGCCTAATCTTGAAAAGCTAGTACTCAAAGATTGTCCAATGTTGTCTGAGATTTCTCCTAGCATTGGACATCTCAAAAAAATTCTTCTGATAAATTTGGAAGACTGCATTAGCCTATGTAGCCTCCCAAGAAGCACCTATAAGTTGAAATCACTGAAAACTCTAATTATTTCTGGTTGTTTAAAGATTGACAAGTTAGAAGAGGACTTAGAACAAATGGAATCTTTAACCGCTCTGATTGCAAATAACACTGCAATAACAAGAGTTCCCTTTTCAGTAGTTAGGTCAAAAAGCATTGGATATATCTCTTTATGCGGCTATGAAGGATTTGCAAGTGATGTGTTTCCATCTATCATTTTGTCTTGGATGTCACCAACAAATAATCTCCCATCCCGATTTCAAACATCGTCTCTCATGTCATCTGTTGTTGCTTTAGATGTACCAATTTCTAAGGAATTGGAATCAACAGCAACTACATCACATGTATCGAATATGGCTACTTCTACATTAATTCGATGCTGCAGTCAAGTGCATGTTTCAGGATCAAAACATTCCTTCAAATCTCTTTTAATTCAAATGGGAATGAATTGCCAAGTCACTGATATTCTGAAAGAGAAAATTTTACAGAATATGGATGTCAATGGGAGTGGTGGTTGTTTGCTCCCCGGTGATAGTTATCCAGATTGGTTAACCTTTAATTCTGAAGGTTCTTCTGTAGCATTTCAAGTCCCACAAGTGGAAGAGCGTAACTTGAAGACAATGATGTGCATTGTTTATACTTCATCCCCGGATAACATAACATCAGATGGTCTTAGAAACGTGTTGGTGATAAATCACACAAAGGCAACCATTCAGCTCTTTAAGAGTGAGGCATTGGTCTCCTTTGAAGATGAGGAGGGGAAGAGACTGGTATCAAGTATAGAACCCGGAAACAAAGTGGAGGTTGTTGTGGTTTATGGGAAAGGTTTCATTGTCAAGAAGACAACAATTTATCTCGTATATGATGAACCAATCGGTGAGAAATTGGAACTATATCATGTACCAGATTTGAATGTCATTGCTTGTAGTGATGATGAAAATGAACGCTTTGCCAAGAGATTATCTAATCAAGAGGAATCCACTGATGACTTCAATCAGAACAGAAAGAAGAAAAGTCGAGTAGAATGA 3147 0.3686 MKKNPLEELRIHEVFLSFRGKDTCASFTSHLYASLQNAKINVYGDDCALPKGDDIPTSLKRTIKQSRVSIIVFSKNYAESSWCMDEMLEIMECHKTIGHVVLLVFYNVDPSEVCHQIGEFGIAFQNLLRKISKREHKLLLGNKNYILQLCQYLEQTWRPTLRKAACLVRLVVLNSKNESEAIKDIVENITQLLDKTDLFIANNPVGIDSRVRDMIELLDTQQSNDVLLLGMWGMGGIGKTTIAKAIYNKIGCNFEGRSFLVNIREVWKQNAGQVNLQEQILFDICKEMTTKIHSIESGNIILRNRLCHKKVLLVLDDVSTLDQLNSLCGSRKWFGSGSRIIITTRDMHILRGNRVDQVYKMKEMDESESIELFSWHAFKQSSPTKDFVAISRNVVEYSGGLPLALEVIGSYLFDRGETEWESVLEKLKMIPNDQVHNKLKISYDGLNDDTEKEIFLDIACFFIGMDRKDVIHILNGSELYPEIGIHVLVERSLVTVDERNKIGMHDLLRDMGREIVREKSPKDPEERSRLWFNKDVLDVLSEQTGTKVVEGLALKLPRENAKCFSTKAFKKMKRLRLLQLDGVQLDGNFEYLSRNLRWLSWNAFPFTCIPAEFYQENLVAIELENSNVKVVWKDTQKMEKLKILNLSHSHYLTRSPDFSNMPNLEKLVLKDCPMLSEISPSIGHLKKILLINLEDCISLCSLPRSTYKLKSLKTLIISGCLKIDKLEEDLEQMESLTALIANNTAITRVPFSVVRSKSIGYISLCGYEGFASDVFPSIILSWMSPTNNLPSRFQTSSLMSSVVALDVPISKELESTATTSHVSNMATSTLIRCCSQVHVSGSKHSFKSLLIQMGMNCQVTDILKEKILQNMDVNGSGGCLLPGDSYPDWLTFNSEGSSVAFQVPQVEERNLKTMMCIVYTSSPDNITSDGLRNVLVINHTKATIQLFKSEALVSFEDEEGKRLVSSIEPGNKVEVVVVYGKGFIVKKTTIYLVYDEPIGEKLELYHVPDLNVIACSDDENERFAKRLSNQEESTDDFNQNRKKKSRVE 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00562 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 127 IPR035897 -
Trre11g00562 1048 MobiDBLite consensus disorder prediction 1025 1048 - -
Trre11g00562 1048 SUPERFAMILY L domain-like 553 833 - -
Trre11g00562 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 790 IPR044974 GO:0006952
Trre11g00562 1048 Gene3D Ribonuclease Inhibitor 552 793 IPR032675 -
Trre11g00562 1048 Gene3D - 10 190 IPR035897 -
Trre11g00562 1048 Pfam TIR domain 12 189 IPR000157 GO:0007165
Trre11g00562 1048 ProSiteProfiles TIR domain profile. 10 193 IPR000157 GO:0007165
Trre11g00562 1048 Coils Coil 723 743 - -
Trre11g00562 1048 Gene3D - 191 358 IPR027417 -
Trre11g00562 1048 PRINTS Disease resistance protein signature 228 243 - -
Trre11g00562 1048 PRINTS Disease resistance protein signature 398 412 - -
Trre11g00562 1048 PRINTS Disease resistance protein signature 305 319 - -
Trre11g00562 1048 PRINTS Disease resistance protein signature 636 652 - -
Trre11g00562 1048 SMART till_3 11 143 IPR000157 GO:0007165
Trre11g00562 1048 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 195 - -
Trre11g00562 1048 SUPERFAMILY "Winged helix" DNA-binding domain 434 540 IPR036390 -
Trre11g00562 1048 Gene3D - 363 447 IPR042197 -
Trre11g00562 1048 Pfam NB-ARC domain 210 431 IPR002182 GO:0043531
Trre11g00562 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 458 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00562 Trre-Chr11 4487342 4491914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00562 27 753 WRKY Transcription Factor Family AT4G12020 31.600 4.52e-82 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00562 - - cam:101494533 1448.72