Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00558 ATGACATCAATGAAGGATGAAAATCAAGAATTGCAGAAGCAAATTGGATGTATCAGTGGATTTTTCCAGCTGTTTGATCGTCATAGGTTCCTCACAAGCCATAACAACAACAGCAACAGTCACAATATACCAAATCAAGGGGGAACAAGTAATAACATCAAAGAGCTGAATAATACAACACAAAAGACAAAGGTAAAGAATGTGAAGGTGGCAAGAGAGAATCAACAATCCTCCACAGAATCATCATCTGGAATATCAATGTCTTCGTCGTCTTGTTCATCTAGCATGTCATCCCTCGAGTTTAACAGAACAATACAGATAGAACCGCCATCGGTAAGTCCAATGAAAATCACAGAAAACTCCAAATCAGAACCAGAAATGAAGCAACTTGGCAGCCAAAGACATCAGCCCCTTGATTTCCTTGATATTGTAAAAGATTCAATGCATATAGATTCACAAAGATTATCGGTGAAAACTCTGGCTAAAGAGGAAAAGAAGAATCGAATCTTGAAACACATCGACTCTCCGCGGCCTATGACAGCTTGGGATTCACCAAGACTCTCCTATGATGGGAGAGATATACAAAGCACACTCAAATCTGCAACAAAGCAAAAGGAACTCCCAAGGCTTTCCTTGGACAGCAAGGTAAGGTCCATCAAAAGTTTCAACGAAGGAGCAAAAAATCGGAACCTTTTGAAGGGTCCACAGAGAGTATGTGGAGGCTCTAACACAATGGTCAAGCAGATGGAAGAACCAGACACTTCTAAAAGACCATCAAGTGTTGTGGCAAAGTTGATGGGACTAGAAGCATTCCCTGATTGGAGCGAAACTTGTGATATCTGCAACACTGACAAAGATGAGACCTTTGCAGGATCTAGAATGAGTGATGAATGCATGCAACAGAAAGATTCGGAATTCTCAAGGACAATCAAAGGGACTACTTTGATTCAATCTCGGAGGGATGGTTCGATCACAAATGTGACACCATATTCACTACAGGCTTCCAAGAGTAGTGAAGCTTCAACAAAAGCATCAAACCGGTCCCTCACAGTTTATGGTGAAATTGAGAAAAGGATGGCGAATCTGGAGTTCACAAAATCCGGAAAGGATCTTAGAGCCCTTAAACAGATTCTTGAAGCAATGCACAGATACAAAGAATCATTAGATACTACAAGTGACCAGGCTTCAAATTCTCCATATGACAATAGGAGTAATAGTAGTGTCAGTGAAAGCTCAAATTTACAAAGCCCAAGAACACGGCAGAAGAACCCGACGACATCTGTCACAGTTGAGAGATTGAATTCAACTCAGGGTAGTAAATCTCCAATTGTCATCGTGAAATCAACAAAGGTTGCAAGAAAAACAAATAATTCTTCCACAGAAATGTCAATTAATGTTAAACCCTTGGGTAGCAAGGTTTCACGCAGCGATCCTACCAATGGAATGTTGGTTGGCAAGCTTGGCAGGCAAACAGCAAAAGGTAGTCCAGCAATCAAACATGTCAGAGATCCTATTAGTCCACCCTTTCGTTCAGTGGATAAAAGCAATAAGATGAGAACTTCAAAATTGATGCAATCCTCAAAAGTTCCTCGAGTCATCATTGGAGAAAACAACACCAACTCCAGCATTATGGTAGAGACCAAGAGCCCGAGACTACAAAAGAAGTTCGGTTTAGAGAGGCGTTCCCCGCCAAGCAGCCCATCATCAGACATCAGCAGTAACAGAAGACAGCAAAATAGGCAATCAATGGAATTGTCTTCCTCGAGAACACCATCTAGACAAAAAATCTCAACTTTGCAGGAAAGAAATGAAAAGGACTCGAGCAAGGAAAGCTTTATGGCTGAAACAATAGTTACTGCAGAACAACCTAGTCCTGTGTCCGTTCTTGATGCCGCGTTCTATAGAGAAGATCCACCTTCTCCGGTAAAAAGGAAAACAAGCATCTCAAAAGATTTAGATGAAGTTCTGAACACTTATGATACTAGTGAGGAGGACTCGGAAGACACAAAAGTCAACTTCAGCAATGGAACCAGTGATATTGACTTGATAACTCATAATTTAGTTCAAATTCTACAACAATTTGAACACAGTGATGATGAAAGACTCACGAGTTTCAGTGACCACAAAGATCCTGACCACAAATATATATCAGAAATACTACTAGCATCGAGGCTGCTTGCCAGTCCCAGATATAGCCAGGCATTGCATTCATCAGGTTACCCAATTAACCCAATGTTGTTCCTTGCACTAGAGAAAATAAAGACAAACAAGATGCATGGTAACATTGCTAATATGAACAATCATGAGAAAATGCAAAGAAAGCTCATCTTTGATGTCGTTAATGAAATGCTATTTCAAAAGCTAATATCAGAGAGTTCTTACAAGCCATATCAGCAAAAAGGAACAAAACCAGAAGGACAGCATCTTTTGGATACGCTTTGCACAGAAATTGATAAGTTACAACATAAAAATAGGAATATCAGCCTGGCTAATGAGGATGAGTATTTGACAAGTATCTTGTTAGAAGATTTGGTGCAGCGACCGACAAATACAGAATGCTACAATGAGATACCAAATGTTGTGTTGGATATTGAAAGATTGATATTCAAAGATTTGATAACTGAAGTTGTGAGAACTGAGAAGTGA 2646 0.3995 MTSMKDENQELQKQIGCISGFFQLFDRHRFLTSHNNNSNSHNIPNQGGTSNNIKELNNTTQKTKVKNVKVARENQQSSTESSSGISMSSSSCSSSMSSLEFNRTIQIEPPSVSPMKITENSKSEPEMKQLGSQRHQPLDFLDIVKDSMHIDSQRLSVKTLAKEEKKNRILKHIDSPRPMTAWDSPRLSYDGRDIQSTLKSATKQKELPRLSLDSKVRSIKSFNEGAKNRNLLKGPQRVCGGSNTMVKQMEEPDTSKRPSSVVAKLMGLEAFPDWSETCDICNTDKDETFAGSRMSDECMQQKDSEFSRTIKGTTLIQSRRDGSITNVTPYSLQASKSSEASTKASNRSLTVYGEIEKRMANLEFTKSGKDLRALKQILEAMHRYKESLDTTSDQASNSPYDNRSNSSVSESSNLQSPRTRQKNPTTSVTVERLNSTQGSKSPIVIVKSTKVARKTNNSSTEMSINVKPLGSKVSRSDPTNGMLVGKLGRQTAKGSPAIKHVRDPISPPFRSVDKSNKMRTSKLMQSSKVPRVIIGENNTNSSIMVETKSPRLQKKFGLERRSPPSSPSSDISSNRRQQNRQSMELSSSRTPSRQKISTLQERNEKDSSKESFMAETIVTAEQPSPVSVLDAAFYREDPPSPVKRKTSISKDLDEVLNTYDTSEEDSEDTKVNFSNGTSDIDLITHNLVQILQQFEHSDDERLTSFSDHKDPDHKYISEILLASRLLASPRYSQALHSSGYPINPMLFLALEKIKTNKMHGNIANMNNHEKMQRKLIFDVVNEMLFQKLISESSYKPYQQKGTKPEGQHLLDTLCTEIDKLQHKNRNISLANEDEYLTSILLEDLVQRPTNTECYNEIPNVVLDIERLIFKDLITEVVRTEK 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00558 881 PANTHER LONGIFOLIA PROTEIN 3 611 IPR033334 GO:0051513
Trre11g00558 881 MobiDBLite consensus disorder prediction 548 610 - -
Trre11g00558 881 MobiDBLite consensus disorder prediction 562 597 - -
Trre11g00558 881 MobiDBLite consensus disorder prediction 33 52 - -
Trre11g00558 881 MobiDBLite consensus disorder prediction 388 442 - -
Trre11g00558 881 MobiDBLite consensus disorder prediction 57 95 - -
Trre11g00558 881 MobiDBLite consensus disorder prediction 490 524 - -
Trre11g00558 881 Pfam Domain of unknown function (DUF4378) 712 875 IPR025486 -
Trre11g00558 881 MobiDBLite consensus disorder prediction 390 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00558 Trre-Chr11 4439414 4444027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00558 1 880 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 29.891 8.66e-69 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00558 - - cam:101511926 1222.61