Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00550 ATGTTTTCAACTTCAATTATCATCAAATGGAGTTCCTTTACTCAATTCAACTTCTTCTTCTCCATTTTTCTCTTCTTAGCTTCACAATACGACGCCGTTTCACCCTATTCCGACAAAACAACACTTCTCCGTCTCAAAAACTCCCTCTCCGACCCCGCCGGTGTTCTCTCTTCATGGAGCTCTTCCTCAAGCCACTGTTCCTGGTATGGTGTTCACTGTGATTCAAACTCCCGTATCGTTGCTCTCAACATCACCGGTGCCGGAGATGGTAACCGGAGTTCACACCTGTGTTCTAATTTTGGTATGTTTCCGCTTTATGGATTTGGAATTAGGAGAAGCTGTTTGGGTTTTAAGGGTTCTTTGTTTGGAAAGTTTCCATCTTTGATCGGTGAGTTAACTGAGCTTAGGGTTTTGTCTTTACCTTTCAATGGATTGGAGGGTTCAATTCCTCAAGAGATTTGGAGTATGGAGAAACTTGAAGTTCTTGATTTAGAAGGTAATTTCATTAGTGGTTATTTACCTTTTAAATTTCAAGGTTTGAGAAAATTGAGGGTATTGAATTTGGGGTTTAATAAGATTGTTGGAGTAGTACCTAGTGTTTTATCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTAGCTTCAAATGATTTGAATGGTTCTGTTCCTGGTTTTATTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCGGAGGAGATTGGTGAGAATTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGGTTGAAGAGATTCCGAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACGCTTTTGTTGTATTCAAATTTGTTGGAAAAGGGTATTCCTGCTGAATTTGGGAACCTTAAGAGTCTTGAGGTGTTGGATGTTTCGAGGAATACACTTGGTGGTTCTATTCCCCGCGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTCTCTAACCTTTTTGATCCTATTGGGGATGCTGGGTTTGTTACTTTGAACGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAGGAGGTTGTGTCGCTTCCTAAGCTTAGGATTTTGTGGGCTCCCAGGGTGAATTTGGAGGGAAGTTTTCCTAGGAGTTGGGGTGCTTGTGCTAACTTGGAGATGGTCAATTTGGCTCTGAATTTTTTCACCGGAGAGTTCCCAAACCGGCTCGGTTTATGCAAGAAGCTGCATTTTCTTGATCTGAGCTCAAACAATCTTATTGGGGAGCTTTCTGAGGAACTTAATGTTCCATGTATGACTGTGTTTGATGTTAGTGCTAACATGTTGTCTGGTTCAGTTCCTGATTTCTCCAATAATGTTTGTTCTCCCTTTCCTTTATGGAACGAGAATCTGTTCGAAACTGATGATGCTGCCTCTCCCTATGCATCATATTTCTCATCGAAAGTTCGTGAGGCAACCCTTTTCACATCACTAGGAGGAGTCGGTTTTTCAGTTTTTCACAACTTTGGGCAAAACAACTTCACCGGCATTCAGTCATTGCCAATAGCGAGTGACAGGATGGAGGAAAAAAGTAGTTACACACTTTTAGTCGGAGAGAACAAGCTAACGGGACAATTTCCTGCATATTTGTTTGAGAAATGTGACGGATTAGATGCATTGCTTTTGAACGTCAGTTACAATAGCCTTTCCGGTGATATTCCTTCTAATATTAGTAGAATGTGCAAATCTCTGAAATTTTTAGATGCATCTGGAAATCAAATTTCAGGACCAATTCCCCTTGGTTTAGGGGATTCGGTCTCTCTTGTTTCCCTGAACCTAAGTGGAAACCAGTTGCAAGGTCATATTCCCACCAGCCTCGGACAGATGAAGGATCTGAAGTTTCTTTCTTTGGCTGGTAATAACTTGAGTGGCTCAATTCCTTCCAATATGGGTCAGCTGTACTCTTTACAGGTCTTGGACCTTTCTACAAACTCTCTTACTGGTGAGATTCCAAAGTTTATCGAGAACATGAGAAATCTGACCAAGGTTATGCTCAATAACAACAACCTTTCTGGATACATTCCTTCTGGTTTGGCAAATGTCGCTTCACTCTCTGCATTCAACGTGTCTTTCAATAACTTATCTGGATACTTGCCATCAAATAGTAGCCTGATCAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTTCCTGCCGCGGAGTTTCTCTGGCTGTGCCATCGGCAAATCAACTAGGGCAGGTTGATGAAAATTCTCCTATTACATCACAAACTACTGAAAAAAAGAGTGATAATGGTTTCAATGCCATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTTCTTATAGCCCTTATTGTTCTGTTTTTCGTCACGCGAAAGTGGAAGCCGAGGTCGAGGGTCGGTGGTTCCATTAAAAGAGAAGTTACTGTTTTTACTGATATTGGTGTCCCAGTGACATTTGAAAATGTTGTCCAAGCCACGGGAAATTTCAATGCAAGCAACTGTATAGGGAGTGGAGGATTCGGCGAAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTTGCAGTGAAACGTCTTTCAGTTGGACGTTTCCAAGGTTTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTAACTTTGATTGGCTACCATGCTTCTGAGACAGAGATGTTTCTCATATACAATTATCTTCCAGGTGATAAAAAATTATTGGACCCTTCATTTTCTTCGTATGGAAATGGTTTCAATATAGTAGCGTGGGGATGCATGCTACTGAGTCAAGGAAGAGCAAAGGAGTTTTTTGCTACAGGTTTATGGGATGCCGGACCGGAAAATGATTTGGTAGAGGTTCTTCACTTGGCAGTTGTTTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGAGAAGGCTAAAGCAACTTCAACCCCCATCATGCTAG 3006 0.4125 MFSTSIIIKWSSFTQFNFFFSIFLFLASQYDAVSPYSDKTTLLRLKNSLSDPAGVLSSWSSSSSHCSWYGVHCDSNSRIVALNITGAGDGNRSSHLCSNFGMFPLYGFGIRRSCLGFKGSLFGKFPSLIGELTELRVLSLPFNGLEGSIPQEIWSMEKLEVLDLEGNFISGYLPFKFQGLRKLRVLNLGFNKIVGVVPSVLSSLESLEVLNLASNDLNGSVPGFIGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNSLVEEIPKSLGNCVGLRTLLLYSNLLEKGIPAEFGNLKSLEVLDVSRNTLGGSIPRELGNCKELSVVVLSNLFDPIGDAGFVTLNDELNYFEGSMPEEVVSLPKLRILWAPRVNLEGSFPRSWGACANLEMVNLALNFFTGEFPNRLGLCKKLHFLDLSSNNLIGELSEELNVPCMTVFDVSANMLSGSVPDFSNNVCSPFPLWNENLFETDDAASPYASYFSSKVREATLFTSLGGVGFSVFHNFGQNNFTGIQSLPIASDRMEEKSSYTLLVGENKLTGQFPAYLFEKCDGLDALLLNVSYNSLSGDIPSNISRMCKSLKFLDASGNQISGPIPLGLGDSVSLVSLNLSGNQLQGHIPTSLGQMKDLKFLSLAGNNLSGSIPSNMGQLYSLQVLDLSTNSLTGEIPKFIENMRNLTKVMLNNNNLSGYIPSGLANVASLSAFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLAVPSANQLGQVDENSPITSQTTEKKSDNGFNAIEIASITSASAIVSVLIALIVLFFVTRKWKPRSRVGGSIKREVTVFTDIGVPVTFENVVQATGNFNASNCIGSGGFGETYKAEISQGILVAVKRLSVGRFQGFQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLPGDKKLLDPSFSSYGNGFNIVAWGCMLLSQGRAKEFFATGLWDAGPENDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00550 1001 ProSitePatterns Protein kinases ATP-binding region signature. 845 867 IPR017441 GO:0005524
Trre11g00550 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 334 - -
Trre11g00550 1001 Gene3D Phosphorylase Kinase; domain 1 803 914 - -
Trre11g00550 1001 ProSiteProfiles Protein kinase domain profile. 839 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00550 1001 FunFam Leucine-rich repeat receptor protein kinase EMS1 548 645 - -
Trre11g00550 1001 Gene3D Ribonuclease Inhibitor 339 463 IPR032675 -
Trre11g00550 1001 Gene3D Ribonuclease Inhibitor 36 226 IPR032675 -
Trre11g00550 1001 Pfam Leucine Rich Repeat 252 274 IPR001611 GO:0005515
Trre11g00550 1001 SMART LRR_typ_2 156 179 IPR003591 -
Trre11g00550 1001 SMART LRR_typ_2 298 322 IPR003591 -
Trre11g00550 1001 SMART LRR_typ_2 250 274 IPR003591 -
Trre11g00550 1001 SMART LRR_typ_2 627 651 IPR003591 -
Trre11g00550 1001 SMART LRR_typ_2 675 698 IPR003591 -
Trre11g00550 1001 SMART LRR_typ_2 180 203 IPR003591 -
Trre11g00550 1001 SMART LRR_typ_2 204 226 IPR003591 -
Trre11g00550 1001 SUPERFAMILY L domain-like 531 737 - -
Trre11g00550 1001 Gene3D Ribonuclease Inhibitor 227 334 IPR032675 -
Trre11g00550 1001 SMART tyrkin_6 839 993 IPR020635 GO:0004713|GO:0006468
Trre11g00550 1001 Gene3D Ribonuclease Inhibitor 482 752 IPR032675 -
Trre11g00550 1001 SUPERFAMILY RNI-like 123 461 - -
Trre11g00550 1001 FunFam Leucine-rich repeat receptor protein kinase EMS1 646 729 - -
Trre11g00550 1001 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 261 917 - -
Trre11g00550 1001 SUPERFAMILY Protein kinase-like (PK-like) 822 917 IPR011009 -
Trre11g00550 1001 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 803 914 - -
Trre11g00550 1001 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 343 518 - -
Trre11g00550 1001 Pfam Protein kinase domain 842 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00550 1001 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Trre11g00550 1001 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00550 Trre-Chr11 4393469 4396825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00550 37 917 Receptor kinase-like Gene Family AT3G02130 57.409 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre11g00550 Pkinase 9.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00550 - - gmx:100819882 1289.25