Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00549 ATGTTTTCAACTTCAATTATCATCAAATGGAGTTCCTTTACTCAATTCAACTTCTTCTTCTCCATTTTTCTCTTCTTAGCTTCACAATACGACGCCGTTTCACCCTATTCCGACAAAACAACACTTCTCCGTCTCAAAAACTCCCTCTCCGACCCCGCCGGTGTTCTCTCTTCATGGAGCTCTTCCTCAAGCCACTGTTCCTGGTATGGTGTTCACTGTGATTCAAACTCCCGTATCGTTGCTCTCAACATCACCGGTGCCGGAGATGGTAACCGGAGTTCACACCTGTGTTCTAATTTTGGTATGTTTCCGCTTTATGGATTTGGAATTAGGAGAAGCTGTTTGGGTTTTAAGGGTTCTTTGTTTGGAAAGTTTCCATCTTTGATCGGTGAGTTAACTGAGCTTAGGGTTTTGTCTTTACCTTTCAATGGATTGGAGGGTTCAATTCCTCAAGAGATTTGGAGTATGGAGAAACTTGAAGTTCTTGATTTAGAAGGTAATTTCATTAGTGGTTATTTACCTTTTAAATTTCAAGGTTTGAGAAAATTGAGGGTATTGAATTTGGGGTTTAATAAGATTGTTGGAGTAGTACCTAGTGTTTTATCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTAGCTTCAAATGATTTGAATGGTTCTGTTCCTGGTTTTATTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCGGAGGAGATTGGTGAGAATTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGGTTGAAGAGATTCCGAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACGCTTTTGTTGTATTCAAATTTGTTGGAAAAGGGTATTCCTGCTGAATTTGGGAACCTTAAGAGTCTTGAGGTGTTGGATGTTTCGAGGAATACACTTGGTGGTTCTATTCCCCGCGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTCTCTAACCTTTTTGATCCTATTGGGGATGCTGGGTTTGTTACTTTGAACGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAGGAGGTTGTGTCGCTTCCTAAGCTTAGGATTTTGTGGGCTCCCAGGGTGAATTTGGAGGGAAGTTTTCCTAGGAGTTGGGGTGCTTGTGCTAACTTGGAGATGGTCAATTTGGCTCTGAATTTTTTCACCGGAGAGTTCCCAAACCGGCTCGGTTTATGCAAGAAGCTGCATTTTCTTGATCTGAGCTCAAACAATCTTATTGGGGAGCTTTCTGAGGAACTTAATGTTCCATGTATGACTGTGTTTGATGTTAGTGCTAACATGTTGTCTGGTTCAGTTCCTGATTTCTCCAATAATGTTTGTTCTCCCTTTCCTTTATGGAACGAGAATCTGTTCGAAACTGATGATGCTGCCTCTCCCTATGCATCATATTTCTCATCGAAAGTTCGTGAGGCAACCCTTTTCACATCACTAGGAGGAGTCGGTTTTTCAGTTTTTCACAACTTTGGGCAAAACAACTTCACCGGCATTCAGTCATTGCCAATAGCGAGTGACAGGATGGAGGAAAAAAGTAGTTACACACTTTTAGTCGGAGAGAACAAGCTAACGGGACAATTTCCTGCATATTTGTTTGAGAAATGTGACGGATTAGATGCATTGCTTTTGAACGTCAGTTACAATAGCCTTTCCGGTGATATTCCTTCTAATATTAGTAGAATGTGCAAATCTCTGAAATTTTTAGATGCATCTGGAAATCAAATTTCAGGACCAATTCCCCTTGGTTTAGGGGATTCGGTCTCTCTTGTTTCCCTGAACCTAAGTGGAAACCAGTTGCAAGGTCATATTCCCACCAGCCTCGGACAGATGAAGGATCTGAAGTTTCTTTCTTTGGCTGGTAATAACTTGAGTGGCTCAATTCCTTCCAATATGGGTCAGCTGTACTCTTTACAGGTCTTGGACCTTTCTACAAACTCTCTTACTGGTGAGATTCCAAAGTTTATCGAGAACATGAGAAATCTGACCAAGGTTATGCTCAATAACAACAACCTTTCTGGATACATTCCTTCTGGTTTGGCAAATGTCGCTTCACTCTCTGCATTCAACGTGTCTTTCAATAACTTATCTGGATACTTGCCATCAAATAGTAGCCTGATCAAATGCAGCAGTGCTGTTGGGAATCCGTTTCTAAGTTCCTGCCGCGGAGTTTCTCTGGCTGTGCCATCGGCAAATCAACTAGGGCAGGTTGATGAAAATTCTCCTATTACATCACAAACTACTGAAAAAAAGAGTGATAATGGTTTCAATGCCATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTTCTTATAGCCCTTATTGTTCTGTTTTTCGTCACGCGAAAGTGGAAGCCGAGGTCGAGGGTCGGTGGTTCCATTAAAAGAGAAGTTACTGTTTTTACTGATATTGGTGTCCCAGTGACATTTGAAAATGTTGTCCAAGCCACGGGAAATTTCAATGCAAGCAACTGTATAGGGAGTGGAGGATTCGGCGAAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTTGCAGTGAAACGTCTTTCAGTTGGACGTTTCCAAGGTTTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTAACTTTGATTGGCTACCATGCTTCTGAGACAGAGATGTTTCTCATATACAATTATCTTCCAGGTGGTAATCTTGAAAAGTTCATCCAAGAGAGATCTACAAGGGCTATGGATTGGAAAATTCTTCACAAGATTGCATTAGACATAGCGCGCGCACTTTCCTATCTGCACGATCATTGTGTACCGCGTGTTCTTCATCGTGATGTAAAACCTAGCAATATCTTGTTGGACGACGATTTCAACGCTTATCTATCCGACTTTGGACTGGCGAGACTTCTCGGAACTTCAGAGACACATGCCACAACCGGTGTGGCAGGAACGTTTGGGTACGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCCGATAAAGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGTTGCTATCAGATAAAAAATTATTGGACCCTTCATTTTCTTCGTATGGAAATGGTTTCAATATAGTAGCGTGGGGATGCATGCTACTGAGTCAAGGAAGAGCAAAGGAGTTTTTTGCTACAGGTTTATGGGATGCCGGACCGGAAAATGATTTGGTAGAGGTTCTTCACTTGGCAGTTGTTTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGAGAAGGCTAAAGCAACTTCAACCCCCATCATGCTAG 3357 0.4167 MFSTSIIIKWSSFTQFNFFFSIFLFLASQYDAVSPYSDKTTLLRLKNSLSDPAGVLSSWSSSSSHCSWYGVHCDSNSRIVALNITGAGDGNRSSHLCSNFGMFPLYGFGIRRSCLGFKGSLFGKFPSLIGELTELRVLSLPFNGLEGSIPQEIWSMEKLEVLDLEGNFISGYLPFKFQGLRKLRVLNLGFNKIVGVVPSVLSSLESLEVLNLASNDLNGSVPGFIGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNSLVEEIPKSLGNCVGLRTLLLYSNLLEKGIPAEFGNLKSLEVLDVSRNTLGGSIPRELGNCKELSVVVLSNLFDPIGDAGFVTLNDELNYFEGSMPEEVVSLPKLRILWAPRVNLEGSFPRSWGACANLEMVNLALNFFTGEFPNRLGLCKKLHFLDLSSNNLIGELSEELNVPCMTVFDVSANMLSGSVPDFSNNVCSPFPLWNENLFETDDAASPYASYFSSKVREATLFTSLGGVGFSVFHNFGQNNFTGIQSLPIASDRMEEKSSYTLLVGENKLTGQFPAYLFEKCDGLDALLLNVSYNSLSGDIPSNISRMCKSLKFLDASGNQISGPIPLGLGDSVSLVSLNLSGNQLQGHIPTSLGQMKDLKFLSLAGNNLSGSIPSNMGQLYSLQVLDLSTNSLTGEIPKFIENMRNLTKVMLNNNNLSGYIPSGLANVASLSAFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLAVPSANQLGQVDENSPITSQTTEKKSDNGFNAIEIASITSASAIVSVLIALIVLFFVTRKWKPRSRVGGSIKREVTVFTDIGVPVTFENVVQATGNFNASNCIGSGGFGETYKAEISQGILVAVKRLSVGRFQGFQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAMDWKILHKIALDIARALSYLHDHCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKLLDPSFSSYGNGFNIVAWGCMLLSQGRAKEFFATGLWDAGPENDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00549 1118 ProSitePatterns Protein kinases ATP-binding region signature. 845 867 IPR017441 GO:0005524
Trre11g00549 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 334 - -
Trre11g00549 1118 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 228 1112 - -
Trre11g00549 1118 CDD STKc_IRAK 845 1113 - -
Trre11g00549 1118 ProSiteProfiles Protein kinase domain profile. 839 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00549 1118 FunFam Leucine-rich repeat receptor protein kinase EMS1 646 729 - -
Trre11g00549 1118 SMART serkin_6 839 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00549 1118 Gene3D Ribonuclease Inhibitor 335 463 IPR032675 -
Trre11g00549 1118 SUPERFAMILY L domain-like 532 737 - -
Trre11g00549 1118 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Trre11g00549 1118 Gene3D Ribonuclease Inhibitor 493 752 IPR032675 -
Trre11g00549 1118 SUPERFAMILY RNI-like 123 458 - -
Trre11g00549 1118 Gene3D Phosphorylase Kinase; domain 1 803 914 - -
Trre11g00549 1118 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 803 914 - -
Trre11g00549 1118 Pfam Protein kinase domain 842 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00549 1118 Gene3D Ribonuclease Inhibitor 36 226 IPR032675 -
Trre11g00549 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Trre11g00549 1118 SMART LRR_typ_2 156 179 IPR003591 -
Trre11g00549 1118 SMART LRR_typ_2 298 322 IPR003591 -
Trre11g00549 1118 SMART LRR_typ_2 250 274 IPR003591 -
Trre11g00549 1118 SMART LRR_typ_2 627 651 IPR003591 -
Trre11g00549 1118 SMART LRR_typ_2 675 698 IPR003591 -
Trre11g00549 1118 SMART LRR_typ_2 180 203 IPR003591 -
Trre11g00549 1118 SMART LRR_typ_2 204 226 IPR003591 -
Trre11g00549 1118 Gene3D Transferase(Phosphotransferase) domain 1 915 1115 - -
Trre11g00549 1118 Pfam Leucine Rich Repeat 252 274 IPR001611 GO:0005515
Trre11g00549 1118 SUPERFAMILY Protein kinase-like (PK-like) 822 1110 IPR011009 -
Trre11g00549 1118 Gene3D Ribonuclease Inhibitor 227 334 IPR032675 -
Trre11g00549 1118 FunFam Leucine-rich repeat receptor protein kinase EMS1 548 645 - -
Trre11g00549 1118 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 343 518 - -
Trre11g00549 1118 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 915 1117 - -
Trre11g00549 1118 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00549 Trre-Chr11 4393469 4396825 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00549 37 1118 Receptor kinase-like Gene Family AT3G02130 63.669 0.0 1348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre11g00549 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00549 - - gmx:100819882 1656.34