Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00546 ATGGCTTCATTTAGTGATGAGAATAGAAAAGGAAGTGGCAAAAAATTGAAAGTTCATTTTGATCTTCCTGAGGATGAAGATTATCATAAAAAACATTCAAGTTCTTCAATTTCATCACAATCTTCACTGGATTCAGATGATAACATAGAAAATTTTGAAGAATCTAATAATATTGGTTATGGTTCACCTGTTTGGAGTTTTCAAAGTGGAACAGTGACACAATCTCCTCCACCTCAATTGATGAGCCCTAACCCTAATTCAGGATATGATCCAAATAGAATACCTTCTTCTGCTTTTGCTCCTAGACCTACAAGTCCTATGGATTGGAGTGTTCAATCAAATGAATCATTGTTTAGTTTACATTTGGGGAATTATAGTTTCTCAAGGGATCAATTTTTCGCATACAAATATTCCGGTGAACTGCCAAAGACTAATGATATTGCCGGGGTGTCTACGACATTGCCACGGGTTCAAGAGGTAAAACATAGTAACGATGACAATATAGTTGAGATGGAGAGACATTCTGTGTCCTCAGACTCCTCTATTGACTCAACTGATACATCAAATGAAACAAAGAATTTGTCTTTGGTGAATGACTGTATAAAAACGTCAACTGAAAATTTAGATTTAGTTTTGAAGGATGATGATCATGATAAAATCGAAACATCGGTAAATGTTGAGAAAACCACATTGGACAAAACTCAAGAAGATCATAGTAAAGCAACGACGGTTCCTCGTGAAGAACCTACTAATTATGCGACCACTGTCTCGTACCGTTCGATCGAAAGTGATACGAGCAATCACTCATTTCAATTTCCTATATTGACACCTGAAGGATTAAGAACTAGTTCAGAAACAATAGAGTCAGAAAAGCGTGAGAATAATGAAAAGCAACATTATCATCAACAACAACAAATGCATCAATCAGAGAAACCAATGAAGTCTCCTAGTCCAAAATCTGAAACAACACCAAAACATAGTTCTAGAACTTCACAATACGACGCCGTTTCACTCTATTCCGAGAAATCAACACTTCTCCGTCTAAAAACCTCCCTCTCCGACCCCGCCGGAGTTCTCTCTTCATGGAGCTCTTCTTCAAGCCACTGTTCCTGGTATGGTGTTCACTGTGATTCAAACTCCCGTGTCGTTGCTCTCAACATCACCGGTGCCGGAGATGGTAACCGGAGTTCACACCCGTGTTCTGATTTTGGTATGTTTCCACTTTATGGATTTGGAATTAGGAGAAGCTGTTTGGGTTTTAAGGGTTCTTTGTTTGGAAAGTTTCCATCTTTGATCAGTGAGTTAACTGAGCTTAGGGTTTTGTCTTTGCCTTTCAATGGGTTGGAGGGTTCAATTCCTCAAGAGATTTGGAGTATGGAGAAACTTGAAGTTCTTGATTTAGAAGGTAATTTCATTAGTGGTTATTTACCTTTTAAATTTCAAGGTTTGAGAAAATTGAGGGTATTGAATTTGGGGTTTAATAAGATTGTTGGAGTAGTACCTAGTGTTTTATCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTAGCTTCAAATGTTTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCTGAGGAGATTGGTGAGAATTGTGGAAAGCTTGAGCATTTGGATTTGTCTGGTAACAATTTGGTTGAAGAGATTCCAAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACGCTTTTGTTGTATTCAAATTTGTTGGAAGAGGGTATTCCTGCTGAATTTGGGAACCTTGAGAGTCTTGAGGTGTTGGATGTTTCGAGGAATACGCTTAGTGGTTCTATTCCTCGTGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTCTCTAACCTTTTCGATCCAGTTGGGGATGCTGGTTTTGTTACTTTGAATGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAGGAAGTTGTGTCTCTTCCTAAGCTTACAATTTTGTGGGCTCCCATGGTGAATTTGGAAGGAAGTTTTCCCAGGAGTTGGGGTGCTTGTGGTAATTTGGAGATGGTTAATTTGGCCCAGAATTTCTTCACTGGCGAGTTTCCAAACCAGCTTGGTTTTTGTAAGAAGCTGCATTTTCTTGATCTAAACTCAAACAATCTTACTGGGCAGCTTTCTGAGGAACTTCATGTTCCATGCATGACTGTTTTTGATGTTAGCGTGAACAAGTTATCCGGTTCGGTTCCTGATTTCTCCAACAGTGGTTGTTCTCCCTTTCCTTTATGGAATGGGAACCTGTTTGAAACCAATGATGTTACGACTCCTTATGCATCATATTTCTCATTGAAAGTTCATGAGAGAACTGTTTTCACATCATTAGGGGGAGTTGGCCTTTCAGTCTTTCACAGCTTTGAGCAAAACAACTTCACTGGCATTCAGTCACTGCCAATAGCACATGACAGGATTGAGGAAAAGAGTGGTTACACACTTCTTGTTGGAGAGAACAAGTTCACGGGACCGTTTCCTACATATTTGTTTCAGAAATGCGATGGATTAGATGCATTGCTTTTGAATGTGAGTTATAATATGCTATCTGGTGAGATTCCTTCTAATATTAGTAGAATGTGCAGATCACTGAAATTTTTGGATGCATCTGGAAATCAGATTTCAGGATCAATTCCCTCTACATTAGGGGATTCGGTCTCTCTTGTTTCCCTGAATCTCAGTAGAAATCGGTTACAAGGTCAGATTCCCACCCGCCTCGGACAGATGAATAATCTGAAGTTTCTTTCTTTGTCTGATAATCACTTGAGCGGTTCAATTCCTACCGGCCTAGGAAATCTGTACTCTTTACAAGTCTTGGACCTTTCTGCAAACTCTCTTACTGGTGAGATTCCAAATTTTATTGAGAACATGAGAAATCTGACTGGTGTTTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGGCAAATGTCACGACACTCTCAGTATTCAACGTGTCTTTCAATAACTTATCTGGATACTTGCCGTCAAATAGTAGCCTGATCAAATGCAGCAGTGCTGTTGGGAATCCATTTCTAAGTTCCTGCCGCGGAGTTTCTCTGACTGTGCCATCGGCAAATCAACAAGGGCAGGTTGATGACAATTCTTCTAGTACCGCACCAGCTACTGGAAAAAATGATAACGGTTTCAGCGCTATTGAAATAGCATCTATAACTTCTGCTTCTGCCATTGTTTCAGTTCTTATAGCCCTCATTGTTCTGTTCTTCTTCACGCGAAGGTGGAAGCCGAATTCCAGGGTTGGTGGTTCTGCCAAAAGAGAAGTTACAGTGTTTACTGATATCGGCGTTCCATTGACATTTGAAAATGTTGTCCAAGCCACGGGAAATTTTAATGCAAGCAACTGTATTGGGAGTGGAGGATTCGGCGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTGGCAGTGAAACGTCTTTCAGTAGGACGTTTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTAACCTTGATTGGCTACCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATCTTTCAGGCGGAACATTTGGTTATGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTCGAGTTGCTTTCTGATAAGAAGGCATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAATATAGTAGCATGGGGATGCATGCTACTGAGGGAAGGAAGAGCAAAGGAGTTTTTCGCGGCAGGTTTATGGGACGCCGGACCAGAAAATGATTTGGTAGAGCCCCTTGCGTGGCTGTGCTCTTTTGTAATCATTATTAATTGGATATTTAAGAAAGGGAACCCTGATTGGCTAATATGGTCCCCGGTGTTTGCATTTGTTTGTTTCTTTAATTCGGTAGGTCGTCCGCACCAACATCATCAACAGTGGAGGTCATGGAGCACACTAAAGTCATCAGTGGTTTTGGAGTACAAGAGGTGTTTAAATTATGTCTGTGGACACCGAGATACAAGCTGCCTAGCAGTAGCAGATACCGAATATTGGCATGAGGAAATGAACTTTCTGATCAGAGCCACCAAAGCTGTGTTAGTCTTCTGGGTTTGGTCTAAAGCAGCAACATACAAAGCATACTATGTCGATGGCAAAGCCGCCGAGTTGTTGTCCACCTAA 4296 0.4055 MASFSDENRKGSGKKLKVHFDLPEDEDYHKKHSSSSISSQSSLDSDDNIENFEESNNIGYGSPVWSFQSGTVTQSPPPQLMSPNPNSGYDPNRIPSSAFAPRPTSPMDWSVQSNESLFSLHLGNYSFSRDQFFAYKYSGELPKTNDIAGVSTTLPRVQEVKHSNDDNIVEMERHSVSSDSSIDSTDTSNETKNLSLVNDCIKTSTENLDLVLKDDDHDKIETSVNVEKTTLDKTQEDHSKATTVPREEPTNYATTVSYRSIESDTSNHSFQFPILTPEGLRTSSETIESEKRENNEKQHYHQQQQMHQSEKPMKSPSPKSETTPKHSSRTSQYDAVSLYSEKSTLLRLKTSLSDPAGVLSSWSSSSSHCSWYGVHCDSNSRVVALNITGAGDGNRSSHPCSDFGMFPLYGFGIRRSCLGFKGSLFGKFPSLISELTELRVLSLPFNGLEGSIPQEIWSMEKLEVLDLEGNFISGYLPFKFQGLRKLRVLNLGFNKIVGVVPSVLSSLESLEVLNLASNVLNGSVPGFVGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNNLVEEIPKSLGNCVGLRTLLLYSNLLEEGIPAEFGNLESLEVLDVSRNTLSGSIPRELGNCKELSVVVLSNLFDPVGDAGFVTLNDELNYFEGSMPEEVVSLPKLTILWAPMVNLEGSFPRSWGACGNLEMVNLAQNFFTGEFPNQLGFCKKLHFLDLNSNNLTGQLSEELHVPCMTVFDVSVNKLSGSVPDFSNSGCSPFPLWNGNLFETNDVTTPYASYFSLKVHERTVFTSLGGVGLSVFHSFEQNNFTGIQSLPIAHDRIEEKSGYTLLVGENKFTGPFPTYLFQKCDGLDALLLNVSYNMLSGEIPSNISRMCRSLKFLDASGNQISGSIPSTLGDSVSLVSLNLSRNRLQGQIPTRLGQMNNLKFLSLSDNHLSGSIPTGLGNLYSLQVLDLSANSLTGEIPNFIENMRNLTGVLLNNNNLSGHIPAGLANVTTLSVFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQGQVDDNSSSTAPATGKNDNGFSAIEIASITSASAIVSVLIALIVLFFFTRRWKPNSRVGGSAKREVTVFTDIGVPLTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLSGGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLREGRAKEFFAAGLWDAGPENDLVEPLAWLCSFVIIINWIFKKGNPDWLIWSPVFAFVCFFNSVGRPHQHHQQWRSWSTLKSSVVLEYKRCLNYVCGHRDTSCLAVADTEYWHEEMNFLIRATKAVLVFWVWSKAATYKAYYVDGKAAELLST 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00546 1431 ProSitePatterns Protein kinases ATP-binding region signature. 1147 1169 IPR017441 GO:0005524
Trre11g00546 1431 MobiDBLite consensus disorder prediction 269 334 - -
Trre11g00546 1431 MobiDBLite consensus disorder prediction 8 33 - -
Trre11g00546 1431 Pfam Leucine Rich Repeat 956 977 IPR001611 GO:0005515
Trre11g00546 1431 Pfam Leucine Rich Repeat 555 577 IPR001611 GO:0005515
Trre11g00546 1431 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 644 731 - -
Trre11g00546 1431 Gene3D Transferase(Phosphotransferase) domain 1 1213 1318 - -
Trre11g00546 1431 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1105 1216 - -
Trre11g00546 1431 SUPERFAMILY Protein kinase-like (PK-like) 1131 1259 IPR011009 -
Trre11g00546 1431 Gene3D Ribonuclease Inhibitor 530 637 IPR032675 -
Trre11g00546 1431 Gene3D Ribonuclease Inhibitor 338 529 IPR032675 -
Trre11g00546 1431 ProSiteProfiles Protein kinase domain profile. 1141 1431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00546 1431 MobiDBLite consensus disorder prediction 1 107 - -
Trre11g00546 1431 SMART LRR_typ_2 459 482 IPR003591 -
Trre11g00546 1431 SMART LRR_typ_2 507 529 IPR003591 -
Trre11g00546 1431 SMART LRR_typ_2 601 625 IPR003591 -
Trre11g00546 1431 SMART LRR_typ_2 553 577 IPR003591 -
Trre11g00546 1431 SMART LRR_typ_2 978 1001 IPR003591 -
Trre11g00546 1431 SMART LRR_typ_2 483 506 IPR003591 -
Trre11g00546 1431 SMART LRR_typ_2 930 954 IPR003591 -
Trre11g00546 1431 SUPERFAMILY L domain-like 530 1022 - -
Trre11g00546 1431 MobiDBLite consensus disorder prediction 284 304 - -
Trre11g00546 1431 SUPERFAMILY L domain-like 362 547 - -
Trre11g00546 1431 MobiDBLite consensus disorder prediction 227 244 - -
Trre11g00546 1431 Gene3D Ribonuclease Inhibitor 638 767 IPR032675 -
Trre11g00546 1431 Gene3D Ribonuclease Inhibitor 798 1052 IPR032675 -
Trre11g00546 1431 Pfam Leucine rich repeat N-terminal domain 340 377 IPR013210 -
Trre11g00546 1431 Pfam Protein kinase domain 1144 1221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00546 1431 Gene3D Phosphorylase Kinase; domain 1 1105 1212 - -
Trre11g00546 1431 MobiDBLite consensus disorder prediction 305 334 - -
Trre11g00546 1431 Pfam Leucine rich repeat 461 520 IPR001611 GO:0005515
Trre11g00546 1431 MobiDBLite consensus disorder prediction 269 283 - -
Trre11g00546 1431 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 546 637 - -
Trre11g00546 1431 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 653 1289 - -
Trre11g00546 1431 MobiDBLite consensus disorder prediction 34 77 - -
Trre11g00546 1431 MobiDBLite consensus disorder prediction 227 253 - -
Trre11g00546 1431 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 803 1045 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00546 Trre-Chr11 4377198 4385570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00546 1219 1310 Receptor kinase-like Gene Family AT3G02130 85.106 4.98e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Trre11g00546 Pkinase 6.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00546 - - vum:124828178 1279.23