Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00543 ATGAGCACAAACACAAAACATAGTTACAAACTCTCTGTGAAAAGAGCAACAAGAAGAACAAGAAGACAATTAGAAGGAAAATGTAAGTCTAAGAAGAAGCTTTCACAGAAGCTACAAGCACTTAAGAATTTAATTCCTTCTCATAATGGTGATGAAGTGAAAACTGATGAATTGTTCAAGGAAACTGCTGACTATATAGTTTTTCTAAGAACAAGGGTGTTGATTCTTCAGAAGCTCATTGAGATTTATGGAAACAACACTGAGAATCAACATGATGTATTATTATAG 288 0.3299 MSTNTKHSYKLSVKRATRRTRRQLEGKCKSKKKLSQKLQALKNLIPSHNGDEVKTDELFKETADYIVFLRTRVLILQKLIEIYGNNTENQHDVLL 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00543 95 MobiDBLite consensus disorder prediction 1 29 - -
Trre11g00543 95 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 10 83 IPR044660 GO:0006355
Trre11g00543 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 83 IPR036638 GO:0046983
Trre11g00543 95 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00543 Trre-Chr11 4363638 4363925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00543 13 82 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 30.000 4.24e-07 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00543 - - cam:101507971 130.568