Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00508 ATGGCAAGTGAAAGTGCTGATTTACTGGTTACCCCGGATGTAACTAAGTCACCTAAGGTTAAAGTAAGAAGGAACTCTGCCGGCAATGCTAGCTCGGGAAATGGTGATGAAAAAGTTGTTCCTAACTATCTCAGAGCTTCCACTGGTTCCTGTCATGATTTGTGTAAATATGGGAGGGAGCATGGATTTGCATCAAAGGAAAGACGATCTATACCGAATAGAGCTACAAGAAAAAAACTTCATCAAAGTTCGGAAGAGAGCATTGGTTGGGTGATTGTCAAGTCCAAACCACCTGTTGATTCCAAGCCGACAAAGATGTCAACAGGCGTACTCAAAGAATCGGTTAATTCCAAGCCAACAAAGATGTCGACGGTCGTACTCAAAGAATCGGTTGATTCAAAGACTCAGATTCCTGATGCCTTAGATACCAATGAACACGAACTTCCATCGAAATCATTTGATAGCCAAAAACATGTTGCGAATGAGGTTAAGGCAAACAGGAAGAAAACATCGTCAGTCGAGGTCAAACCATCACTCCTAAAGTCTCGTACTTCTCCATCGACAAGTCAAGAAATTTCATCATCAACTGATAAGGAGGTATCAAAATCAACCCCCAAGAAGGTAGAAAATACATCAAAACCAACTTCCAAAGTCAAAATTTCATCAAAATCAACATATGGTCCGGTCGAAGCTGTGTCAAAATCGACTCTCAAAAAGGTTGAAAATACTTCCAAAGTTAAAACTTCATCAAAATCGACTTCCAAGATCTCGGGAGCTTCACCGCAGTTATCTTCTTTAAATGGTAAAGAAATGAAGTTGTCGGAAAAACATTCGACACCTTCGAATTCAAATCGCGTTGCAAAGAAGAAAGTATCTTCCTCTATGAATTCCTCAGAAGGCTTTGATGACAAAATAATTAGTGGGATCAACACAGAAAAGAAACTAGCCTCCTCCAAAACAGCTTCAAGAAAACCAATAGCACCTATAAAAGCTTTATCATCTCCAAGAGCTTCTCTTAAAAGAGTTTCAAGTCTAAATTCAAGAAAGCACAAGGGCCTCAAAATTGTGTCGCATCTTAGGAATCAGAAGACTGCAAAAGAAGATGAGCTCGAAGAACACAACAATAACAACAACACCACCACCAACAACAACGACGACAATGAGGTGGAGGAAAAGACTTTGTACGTCATCAAGACGGAAAGTGAAAACAAAACTGCGGAATCTGATCAAACTGCAAGCTACGATGATGAGCCGTACCTCCCTCAGTTGTCCACACCTATTTCTTCGTCAACCTCAGTTACTCGATCCTTATCTGACGAAGACGAGGGATCTGAATATACAACTAGTGAATTTGAGGTGGATTCTTTATCGGGAAACTGTGAAATCGAATGCATGGAAAACGAGGAGGCTTTAAAAGTCGAGAAGAAAGGCAACACGAGAAAGGTTAAGGAAGTTGAAGACAAGGACGGTGAAATGATAAAATTGAAGTTCAGAAGAGGGAAAGTGGTTGATAATAAAATTGAGAAAAATACTCCAAGGAGGCTTACATTTCGGAGAGCGAAAACATTGGCAGAGAAAGCAAATGTTAACGATGACGGCGAAAGGAAAAGCTATAAAAAAAGAGATGAAGCATGTAGTGAGAGCAATGATGGTGCCAATGGTCAAGAGAAAGTTGTTTTGAGACACCAAGATGTTGAGGATAAGAAAGATGCACAAGGATTGTTTAACAATGTTATCGAGGAAACGGCAAGTAAACTTGTTGAAGCTAGGAAGAGCAAGGTTAAAGCATTGGTTGGTGCATTTGAAACTGTGATTTCTCTTCAAGACAAAAAACCACCTTCTGCAAACATAGTTAGTTGA 1860 0.4 MASESADLLVTPDVTKSPKVKVRRNSAGNASSGNGDEKVVPNYLRASTGSCHDLCKYGREHGFASKERRSIPNRATRKKLHQSSEESIGWVIVKSKPPVDSKPTKMSTGVLKESVNSKPTKMSTVVLKESVDSKTQIPDALDTNEHELPSKSFDSQKHVANEVKANRKKTSSVEVKPSLLKSRTSPSTSQEISSSTDKEVSKSTPKKVENTSKPTSKVKISSKSTYGPVEAVSKSTLKKVENTSKVKTSSKSTSKISGASPQLSSLNGKEMKLSEKHSTPSNSNRVAKKKVSSSMNSSEGFDDKIISGINTEKKLASSKTASRKPIAPIKALSSPRASLKRVSSLNSRKHKGLKIVSHLRNQKTAKEDELEEHNNNNNTTTNNNDDNEVEEKTLYVIKTESENKTAESDQTASYDDEPYLPQLSTPISSSTSVTRSLSDEDEGSEYTTSEFEVDSLSGNCEIECMENEEALKVEKKGNTRKVKEVEDKDGEMIKLKFRRGKVVDNKIEKNTPRRLTFRRAKTLAEKANVNDDGERKSYKKRDEACSESNDGANGQEKVVLRHQDVEDKKDAQGLFNNVIEETASKLVEARKSKVKALVGAFETVISLQDKKPPSANIVS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00508 619 SMART CaM_binding_2 491 606 IPR012417 GO:0005516
Trre11g00508 619 MobiDBLite consensus disorder prediction 343 357 - -
Trre11g00508 619 Pfam Plant calmodulin-binding domain 494 606 IPR012417 GO:0005516
Trre11g00508 619 MobiDBLite consensus disorder prediction 107 131 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 207 239 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 360 374 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 22 36 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 139 171 - -
Trre11g00508 619 PANTHER EMB|CAB62594.1 18 257 - -
Trre11g00508 619 Coils Coil 356 390 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 385 411 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 277 304 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 527 547 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 246 269 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 172 199 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 527 557 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 96 452 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 415 437 - -
Trre11g00508 619 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00508 Trre-Chr11 4080265 4082124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00508 556 604 Calmodulin-binding Proteins AT2G38800 46.000 2.69e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00508 - - mtr:25495325 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00508 11 4080265 4082124 Trre13g00254 13 2037762 2042148 PCT