Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g00505 | ATGGCGACTGCGAAACCTCAACGAACTCCACAGGAAGTGGAAGACATCATCATCCGCAAAATCTTCCATGTAACAATCACCGGAGAATCAACAACCACCACCGGAGCAACCGATTCGAGAATCGTTTATCTCGAACTAACTGCCGCAGAGATTCTCAGCGAAGGAAAAGACCTTCTCCTTTCTCGCGATGTTATGGAACGAGTCCTCATCGATCGTCTTTCCGGCAATTTCCCCGGCGCCGAAAACTCACCGTTTCAGTATCTTCTCGGTTGTTACAATCGAGCTCACGATGAAGCGAAGAAAATCGTTAACATGAAGGATAAAAACCTTAGGTCAGAGATGGAAACTGTTGTGAAGCAAGCGAAGAAACTCTGTGTTTCGTATTGTAGAATTCATCTCGCGAATCCTGAGCTATTCGCCAGTCAGAATTCAAATTCCGGCACCGGAAGGTCGCCTTTGTTGCCGCTGATTGTATCGGAGTGTGGTGGAGGCGGTGGAATGGGGGTTTTTGGCAGTGGCAGTGATACAGGAGGAGTGAAAAGTCCTCCAGGGTTTTTAGATGAGTTTTTTAGGGATCCTGATTTTGAAAGTTTAGATGGAATTTTGAAAGGGTTGTATGAGGAATTAAGAGGGAATGTGATGAAAATTTCTGTTCTTGGAAATTTTCAGGATTCTCTTAGGGCTTTGTTGTTTTTGGTTAGGTTACCTGTTGGTGCTAAGTCTCTTGTGAGTCATGAATGGTGGATTCCTAAAGGTGTTTATATGAATGGTCGCGCTATCGAAATGACTAGTATTTTGGGTCCTTTTTTCCATATCAGTGCTCTTCCTGATCAAACCTTCTTCAAGAGTAATCCGGATATTGGGCAGCAGTGCTTTTCTGATGCGTCAACTCGGCGGCCATCTGATTTATTATCTTCATTCACCACCATTAAAACTGTCATGAATACCTTATATGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGACACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATCTAAATGCATCTAGGGCTCATATACAGGTTGACCCGATGACTTGCGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCAGTCATGCTCCGCCTCTGCGAACCATTTTTAGACGCAAATCTAACAAAAAGGGATAAAATTGATGCCAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGGTTTGACTGCCCTTCATGCTTCATCAGAAGAAGTTACTGAATGGCTTGATAGTAAAAACCCAGCTAAGGCAGGGGAAATGAATCAATGTAATGATGGTGAGAAACGTCTGAAACAATCTCAAGAGGCCAGCAGTTCTGGTAGTAGTAATGCCAGTGCAAAATATTCATTTATATGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACCTGGGGCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAAGATACTCTCGCCACACTTAAAAACATGCAGGGACAGTCACCTTCTCCTCAATTGGAATTAGATATAACTCGACTTGAGAAAGAACTTGAGTTGTATTCACAGGAAAAACTTTGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCACTTTCGTTCTACCGCTTGATGGTCGTCTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCAACATGCCCAATGGAATTTTCTGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTTTGCTGGATGAGTTTATGAACTTCATAATAATGTTCATGGGCAGCCCTGATTTTATCAAAAATCCATATCTGAGAGCCAAGATGGTTGAAGTTCTGAACAACTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCATCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTTAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTTTACGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTTGAATACCTGTGGAATGTCCCCAGTCATCGTAGTGCGTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTTTATCTCAATTTCTTAAACTTTCTCATTAATGATAGTATTTATCTTCTCGATGAAAGTCTGAACAAAATTCTAGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACTGTCGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTCGAATCGATATGAAGTTGGCCAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGCCCCCAAAGAAAATCACTCAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGCGACACAAATTCCATCTTCCCATCTGCCATATCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGCTCTGCTGCAGACGTCCTTCGTCGAATTGGCGAGGATGGAAGAATTATACAGGAATTTATTCAGCTCGGTGCTAAAGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCCGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTGGATCCAATTCAATATACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAAGACTACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTACTGATCCATTCAACCGTTCTCATCTTACCGCCGATATGCTGATACCTGATGTCGAACTCAAAGCAAGAATTGAAGAATTTATCAGGTCTCAGGAAATGAAGAAACACAGTGAAGGCCTAAGCATGCAAAGTAACAAGGCCACCATTCAACCCACAAATGCTGATATGTTGATTGATTAG | 3102 | 0.422 | MATAKPQRTPQEVEDIIIRKIFHVTITGESTTTTGATDSRIVYLELTAAEILSEGKDLLLSRDVMERVLIDRLSGNFPGAENSPFQYLLGCYNRAHDEAKKIVNMKDKNLRSEMETVVKQAKKLCVSYCRIHLANPELFASQNSNSGTGRSPLLPLIVSECGGGGGMGVFGSGSDTGGVKSPPGFLDEFFRDPDFESLDGILKGLYEELRGNVMKISVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFKSNPDIGQQCFSDASTRRPSDLLSSFTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPMTCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVTEWLDSKNPAKAGEMNQCNDGEKRLKQSQEASSSGSSNASAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKNMQGQSPSPQLELDITRLEKELELYSQEKLCYEAQILRDNTLIQNALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSAMPEHFVEDAMELLIFASRIPKALDGVLLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRSAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSKTTVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHSEGLSMQSNKATIQPTNADMLID | 1033 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g00505 | 1033 | SUPERFAMILY | RING/U-box | 927 | 1006 | - | - | |
| Trre11g00505 | 1033 | ProSiteProfiles | U-box domain profile. | 934 | 1008 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre11g00505 | 1033 | CDD | RING-Ubox_UBE4A | 937 | 1005 | - | - | |
| Trre11g00505 | 1033 | MobiDBLite | consensus disorder prediction | 424 | 457 | - | - | |
| Trre11g00505 | 1033 | FunFam | Ubiquitin conjugation factor e4 a | 934 | 1012 | - | - | |
| Trre11g00505 | 1033 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 934 | 1013 | IPR013083 | - | |
| Trre11g00505 | 1033 | PANTHER | UBIQUITINATION FACTOR E4 | 3 | 1011 | IPR045132 | GO:0000151|GO:0030433|GO:0034450 | |
| Trre11g00505 | 1033 | Pfam | Ubiquitin elongating factor core | 266 | 918 | IPR019474 | GO:0000151|GO:0006511|GO:0016567|GO:0034450 | |
| Trre11g00505 | 1033 | Pfam | U-box domain | 935 | 1006 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre11g00505 | 1033 | Coils | Coil | 513 | 540 | - | - |
Showing 1 to 10 of 11 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g00505 | K10597 | - | gmx:100806175 | 1721.44 |
Showing 1 to 1 of 1 entries