Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00500 ATGGAAGGAACAAAGAAGAGAGTGTTTGGTTCATCAATTTCACCAACAATGGTGTTTCTATTTCTGGGTTTTGCTGTTCTTTTCATTTTACCAATGGCATCAGCTACAAAAGTTACAGTTGGTGGTAAAATGGGTTGGACCACAAATTTCAATTACACTACTTGGGCTAAAGGAAAGCATTTCTACAATGGTGATTGGCTTTTTTTTGTGTATGATAGGAATCAACAGAATGTACTAGAAGTGAACAAAACAGATTATGAAACTTGCAACTCAGATCACCCGCTTCACAATTGGACAACCGGAGCTGGAAGAGATGTCGTACCATTGAACGTGACTCGCCATTACTATTTCATAAGCGGCAAAGGATTTTGCTTTGGTGGAATGAAAATTGCTGTTCATGTTGAAAATCTACCACCACCACCAAAAGCTTCACCTATAAAATCTTTTGCACCAACCCTTTCTTCTAAAGGACATATCTTTCTAATGCCTATTTTTTTGCTATTGGTGCAGCTTGGGATTCATTCATTTATTTATGGTGTGGATACGGTACCAGACTGGTACGGGGGTTTTTCGTCTCCCTTCACCAACTTCTTCAAGATGGAATCACAAATTAAGCACGCTCAAGTTGTCAAAATTATGGGACGTACTGGATCTCGAGGACAGGTCACTCAAGTTAGAGTGAGGTTTATGGATGATACCAGTCGCATGATCATGAGGAATGTGAAAGGACCTGTTAGAGAAGGAGACGTTCTCACCCTACTTGAGTCCGAGAGAGAAGCAAGAAGACTCCGATAG 795 0.405 MEGTKKRVFGSSISPTMVFLFLGFAVLFILPMASATKVTVGGKMGWTTNFNYTTWAKGKHFYNGDWLFFVYDRNQQNVLEVNKTDYETCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCFGGMKIAVHVENLPPPPKASPIKSFAPTLSSKGHIFLMPIFLLLVQLGIHSFIYGVDTVPDWYGGFSSPFTNFFKMESQIKHAQVVKIMGRTGSRGQVTQVRVRFMDDTSRMIMRNVKGPVREGDVLTLLESEREARRLR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00500 264 Gene3D - 34 137 IPR008972 -
Trre11g00500 264 SUPERFAMILY Cupredoxins 35 134 IPR008972 -
Trre11g00500 264 PANTHER 40S RIBOSOMAL PROTEIN S28 200 264 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre11g00500 264 ProSitePatterns Ribosomal protein S28e signature. 255 263 IPR028626 -
Trre11g00500 264 Hamap 30S ribosomal protein S28e [rps28e]. 200 264 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre11g00500 264 FunFam 40S ribosomal protein S28 199 264 - -
Trre11g00500 264 FunFam Lamin-like protein 34 137 - -
Trre11g00500 264 ProSiteProfiles Phytocyanin domain profile. 36 136 IPR003245 GO:0009055
Trre11g00500 264 Pfam Plastocyanin-like domain 46 128 IPR003245 GO:0009055
Trre11g00500 264 SUPERFAMILY Nucleic acid-binding proteins 200 264 IPR012340 -
Trre11g00500 264 Gene3D - 198 264 IPR012340 -
Trre11g00500 264 CDD S1_S28E 205 264 IPR000289 GO:0003735|GO:0005840|GO:0006412
Trre11g00500 264 Pfam Ribosomal protein S28e 203 263 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00500 Trre-Chr11 4017589 4024359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00500 20 167 Phytocyanin Superfamily AT5G15350 55.034 2.81e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00500 - - mtr:11412511 310.071