Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00492 ATGATTTGGATTTCAAAAAATGTGTTATTTGTTTCTTTGTTACTAACCGTTCTCGTTGCTTTACAGTTCAAAGATGGTGAAAGCGACATTTTCCACAAGCCAAGAGTAAATGTTTTTATTACCAACGACTTACCTAATCTTCAACTAAGGCTTCGTTGTAAAGACAAAACACATGATCTTGGGGAGCAATTACTAAATCCTGGACAAAGTTTCACATTTTCTTTTAAACCTAGTTTTTTTGGAGTATCCTTATACTTTTGTGCATTTTCATATTATGGAGAAGGAATTCACCACTTTGACATTTATGATGAACATAGAGATCAGGAAAATTGCAAACATGAATGTCATTGGAAAATAAAGAAAGCAGGACCATGTAAGGAACCATCTCCAACTGAAGAAGAATGTTTTCCTTGGCCTCCTAATAATGTTGTTGTGTAA 438 0.3379 MIWISKNVLFVSLLLTVLVALQFKDGESDIFHKPRVNVFITNDLPNLQLRLRCKDKTHDLGEQLLNPGQSFTFSFKPSFFGVSLYFCAFSYYGEGIHHFDIYDEHRDQENCKHECHWKIKKAGPCKEPSPTEEECFPWPPNNVVV 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00492 145 Pfam Plant self-incompatibility protein S1 38 138 IPR010264 -
Trre11g00492 145 PANTHER - 35 126 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00492 Trre-Chr11 3988180 3988617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00492 31 138 Carbohydrate Esterase AT3G16970 43.478 1.40e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00492 - - tpra:123910178 199.519