Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00488 ATGAATGGATCAAGTAGCTCTGGCTGTGGAAGTGTGAACACGTGTATTGCAAATTATAAGTTGGTTAGGACACTGTGCTCTTGGAAATTTGGCAAGGTCATATTTGCAGAGCATGTATTGAGTGGTGATAAAGTTTCTATATATATTATTAACCGTCGTTGGACATTCGACAAACAAATGGAAGAAATGGTAAGAGAAGAAATCAATATTTTAAGATTGTTAAGGCATCCTCACATTATACAAGTTTATGATGTGGTAGAAACCACAACCAATATATATGTTATTATGGAGTATGTGGAATTTGGAGAACTTTTTGATTATATAATAGTAAAAGGTATGTTGCAAGAAGACGAAGCGCGCAAATTTTTTCAACAGATAATTTCTGGTGTGAAGTATTGTCACAACAATATGGTGGCTCATAGAGACTTAAGGCCTGAAAATATATTTTTGGACTCAAATTATAATATCAAGATTGCTGGTTTTAGCTTGAGCAAAACTATGAAACATGGTCAATTACTTAAGACAAGTTGTGGAAGTACTCACTATGCAGCCCCAGAGGTTATCTCTGGAAAATTATATGCTGGATCTAAAGTTGATGTTTGGAGTTGTGGTGTACTTTTATATGCTCTTCTATGTGGTAGACTTCCTTTTGATGATGAAAATATTCCCAAGCTTTACATAAATATAAAGGGAGGCGTATACACTATTCCTAGTTATTTATCACATGGTGCTAGTGACTTAATATCAAGGCTTCTTGAGGTGGATCCTATGAAGAGAATTACCATACTAGAGATACACCAACACCCTTGGTTCAAAATTTCTCTGCCAAATTATTTGGCATTGCCACCACCACCACCACCACCAGAGAAAGTTCAACAACCCAAAAAGGATACTAATTCTTTAGAGTTTAAAAAGATTCCAAAATGTGACGATGATTTAGAAATGATGACAAAGATCATAGGAGGAAAAATTTGA 975 0.3497 MNGSSSSGCGSVNTCIANYKLVRTLCSWKFGKVIFAEHVLSGDKVSIYIINRRWTFDKQMEEMVREEINILRLLRHPHIIQVYDVVETTTNIYVIMEYVEFGELFDYIIVKGMLQEDEARKFFQQIISGVKYCHNNMVAHRDLRPENIFLDSNYNIKIAGFSLSKTMKHGQLLKTSCGSTHYAAPEVISGKLYAGSKVDVWSCGVLLYALLCGRLPFDDENIPKLYINIKGGVYTIPSYLSHGASDLISRLLEVDPMKRITILEIHQHPWFKISLPNYLALPPPPPPPEKVQQPKKDTNSLEFKKIPKCDDDLEMMTKIIGGKI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00488 324 SMART tyrkin_6 19 271 IPR020635 GO:0004713|GO:0006468
Trre11g00488 324 SUPERFAMILY Protein kinase-like (PK-like) 17 299 IPR011009 -
Trre11g00488 324 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00488 324 Gene3D Transferase(Phosphotransferase) domain 1 10 313 - -
Trre11g00488 324 Pfam Protein kinase domain 21 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00488 324 FunFam Maternal embryonic leucine zipper kinase 11 279 - -
Trre11g00488 324 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 11 277 - -
Trre11g00488 324 Coils Coil 321 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00488 Trre-Chr11 3961486 3964505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00488 16 271 CBL-interacting serine-threonine protein kinases AT4G24400 45.914 5.87e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Trre11g00488 Pkinase 2.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00488 K07198 - mnt:21403819 390.963