Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g00487 | ATGGCAAGAAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTTTGGGATGAAATGATGAAAGAAGCTGCATCACTTGGAGGAGCAAGACGAGTCCGAAAGAGATTTGTCGGTGTTCGACAAAGGCCATCGGGTAGATGGGTTGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAGGCTGCTTGTTTGCTTCGCGGCGCAAATACTCGGACGAATTTTTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACTAATCTTCTACTTCAAAGACTTAAAGAAAGGAATATGAATATGAATAATAATTCTTGTTCATCCTTTTCTTCGTCGAAATTTACTTCCTTGTTGGGGAGTTCAGGGGAGCGTCGGGAGCAACAACGAGTCAATGATCAGGATCATCAGGAGATCCAACAAGTGGAACCCTATGGAGAAGGATCAAAAGATTTTTCAATTGATCAATTCACTGATTTCCTTAATGATCATGTAGATTATACAACAATCAACAATGAAATCATCAATGACACTACACAATTCGATTACATTTCAAGTAGTTTCGAATCATGTTTAACCGAAAACAATGGTTGTAACAAAGAGGATGAAATGAATATGGAATCTAAATCAAACAATGTAACACAAACTTCAAGTGGTGATAGTAATTCAGAAGATAGTGAAGAAGAAGTCAATAATGATGTTCCTGATTTTCGGTTCCTTGACGATATTGCTCCAACTAGTTACTATTCTCCTTTTGAAATTGCTGAAGAAATGGAAGAACAAATGGAAACAGAAAGTTTTTGTGATGAGCCTTCAATGATTAGAGCTGTTATGAAAAGAATGAAATATGAAAGAAAATTTTCAGCTTCTCTTTATGCATTTAATGGAATACCAGAATGCTTGAAATTAAAACTTGAATCATCAGGAAACAATAATGGAAGAGGAATTTCTGATCAATTGAACAATCTCAAGGAAGCATGTAGCAAGAATAAACTTGAGAAGAAGAAAAATGAAGAAAATCAACAAAGTTCAATTGAGATGATAGAGTCTTCATCTTTGTCTAGGAATGATAGTGATATTTTCCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTCAATTAG | 1218 | 0.3539 | MARKRKVSEVVEEGSMVWDEMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNMNNNSCSSFSSSKFTSLLGSSGERREQQRVNDQDHQEIQQVEPYGEGSKDFSIDQFTDFLNDHVDYTTINNEIINDTTQFDYISSSFESCLTENNGCNKEDEMNMESKSNNVTQTSSGDSNSEDSEEEVNNDVPDFRFLDDIAPTSYYSPFEIAEEMEEQMETESFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESSGNNNGRGISDQLNNLKEACSKNKLEKKKNEENQQSSIEMIESSSLSRNDSDIFLWNSLDLPPICFVNLLENGSFN | 405 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g00487 | 405 | MobiDBLite | consensus disorder prediction | 353 | 372 | - | - | |
Trre11g00487 | 405 | SUPERFAMILY | DNA-binding domain | 37 | 94 | IPR016177 | GO:0003677 | |
Trre11g00487 | 405 | Gene3D | AP2/ERF domain | 36 | 94 | IPR036955 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | PRINTS | Ethylene responsive element binding protein signature | 38 | 49 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | PRINTS | Ethylene responsive element binding protein signature | 60 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | FunFam | ethylene-responsive transcription factor RAP2-11 | 36 | 95 | - | - | |
Trre11g00487 | 405 | Pfam | AP2 domain | 37 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | ProSiteProfiles | AP2/ERF domain profile. | 37 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | SMART | rav1_2 | 37 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | Coils | Coil | 342 | 362 | - | - | |
Trre11g00487 | 405 | MobiDBLite | consensus disorder prediction | 221 | 256 | - | - | |
Trre11g00487 | 405 | CDD | AP2 | 36 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Trre11g00487 | 405 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 19 | 310 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g00487 | Trre-Chr11 | 3957548 | 3958765 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g00487 | 35 | 113 | AP2-EREBP Transcription Factor Family | AT5G19790 | 73.418 | 9.25e-33 | 122 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Trre11g00487 | AP2 | 7.9e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g00487 | K09286 | - | gmx:100790398 | 476.863 |