Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00477 ATGGCACCTTTTGTATTGACAGTGTCACAAAATGGAACAGGAAACTATAGAACAGTACAAGAAGCGATTGATGCAGTGCCACTAGGCAATACTCGTCGGACGGTTATAAGGATATCACCAGGAATCTACCGGCAACCACTATATGTTGCAAAGACCAAGAACTTCATAACTTTTGTTGGTTTGTGTCCTGAAGATACTGTTCTGACATGGAACAATACTGCCAATAAAATTGATCACCACCAAGGTTCTAAGGTGATAGGGAATGGAACTTTTGGTTGTGGAAGTACTATTGTTGAAGGAGAAGACTTTATTGCTGAGAATATTACCTTTGAGAATTCTTCTCCTGAGGGTTCAGGGCAAGCAGTGGCAGTTAGAGTATCAGCAGATCGATGTGCATTCTATAATTGTAGGTTCCTTGGGTGGCAGGACACACTGTATTTACATTCTGGAAAACAATATTTGAAAGATTGTTATATTGAAGGAAGTGTAGATTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCATTGTCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAAATTTCCACATGAAAAAACTGGTTATGTATTCCTAAGATGTGTTATAACAGGCAATGGAGGAAGTTCATATGCATACCTTGGAAGGCCATGGGGAACTTTTGGAAGAGTGGTCTTTGCATTTACTTATATGGATCATTGTATAAAGTCTGCTGGTTGGAATAATTGGGGAAAAGTTGAGAACGAAAAAAGTGCCTGCTTCAACGAATACAGGTGTTTTGGACCGGGTTTTGTTCCATCAAAACGCGTAAGATGGGCAAGAGTGTTGAAGGATAAAGAAGCTGAGCAATTTCTAATGCATAGCTTCATTGATCCAGAACCACAAAGACCTTGGCTTGCTCAAAGAATGGCCTTAAGGATTCCATATTCTGCATAG 951 0.4017 MAPFVLTVSQNGTGNYRTVQEAIDAVPLGNTRRTVIRISPGIYRQPLYVAKTKNFITFVGLCPEDTVLTWNNTANKIDHHQGSKVIGNGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAVRVSADRCAFYNCRFLGWQDTLYLHSGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKFPHEKTGYVFLRCVITGNGGSSYAYLGRPWGTFGRVVFAFTYMDHCIKSAGWNNWGKVENEKSACFNEYRCFGPGFVPSKRVRWARVLKDKEAEQFLMHSFIDPEPQRPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00477 316 SUPERFAMILY Pectin lyase-like 3 303 IPR011050 -
Trre11g00477 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Trre11g00477 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Trre11g00477 316 FunFam Pectinesterase 2 309 - -
Trre11g00477 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Trre11g00477 316 Gene3D - 4 309 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00477 Trre-Chr11 3887843 3890005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00477 5 309 Carbohydrate Esterase AT5G47500 38.978 1.52e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00477 K01051 - gmx:100810259 569.311