Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00469 ATGGGAAGATCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCAGAAGAAGATCAAAAACTCTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGCGCTTTACCCACTAAAGCCGGACTTCAAAGATGTGGTAAGAGCTGCAGATTAAGATGGACTAATTATCTTAGGCCTGATATTAAGAGAGGAAAATTTAGTTTGCAAGAAGAACAAACAATTATTCAACTCCATGCTCTCTTAGGGAACAGGTGGTCAGCTATAGCAACACATTTGTCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGATTAACAAAAATGGGAATTGATCCTGTTACACACAAGCCTAAAAATGATACTCTTCTTTCATCAAGTGATAATGCTCATTCAAAAACAGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATTCGTTCACATAATCATAATCATAATCATAATCATTTTGGTGGAAATTCTCATTTGAAGGCTTGGAATATTAATCTTGAATCTCCTACTTCAACTTTATCTTACAATGAAAATGTGACACCAATTATTACTAGTGGAGAAATTGGGGGTGAAAATAGCAAAAAAAACAACAATGATGATGAAAATATTAATAATGATGAAAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGGACAAATTCAAGTTCAATTGTGAAAGAAGAAGGTGGTGATGATCAAGAACAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAGAAGGTGTTGGTGATGTTATTGCTGAAGAAGGGTTTACTAATCTTTTGCTTAAAACAAATTCTGAAGATTTGAGTTTGTCAGAAAGTGGAGGTGAATCTAACAATGGTGGTGGTGATGGTGGAAGTGGAAGTGAATTCTATGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCTTCTGATTCACCAATGTTTTGA 1086 0.3425 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDTLLSSSDNAHSKTASNLSHMAQWESARLEAEARLVRESKIRSHNHNHNHNHFGGNSHLKAWNINLESPTSTLSYNENVTPIITSGEIGGENSKKNNNDDENINNDENNVVVSMIEFVGTNSSSIVKEEGGDDQEQWKGYESSLTFTSNLHHELTMSMDQEGVGDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGGDGGSGSEFYEDNNNYWNSILNLVNSSPSDSPMF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00469 361 CDD SANT 69 112 IPR001005 -
Trre11g00469 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre11g00469 361 CDD SANT 16 61 IPR001005 -
Trre11g00469 361 Gene3D - 13 66 - -
Trre11g00469 361 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre11g00469 361 SMART sant 66 114 IPR001005 -
Trre11g00469 361 SMART sant 13 63 IPR001005 -
Trre11g00469 361 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre11g00469 361 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre11g00469 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Trre11g00469 361 MobiDBLite consensus disorder prediction 122 142 - -
Trre11g00469 361 MobiDBLite consensus disorder prediction 216 235 - -
Trre11g00469 361 FunFam MYB-related transcription factor 13 66 - -
Trre11g00469 361 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre11g00469 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre11g00469 361 FunFam MYB transcription factor 69 116 - -
Trre11g00469 361 Gene3D - 68 147 - -
Trre11g00469 361 MobiDBLite consensus disorder prediction 313 336 - -
Trre11g00469 361 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00469 Trre-Chr11 3821839 3824041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00469 1 361 MYB Transcription Factor Family AT3G01140 55.381 7.98e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g00469 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00469 K09422 - gmx:100101835 442.58