Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00467 ATGGATGCAATGGAGCAAAATTCAAGAGATGTAGAGAGTGATAAAAAATTTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAGTTCTTGATAATTGCTTTTGTGCTATTGCCATTGGAGAAGCAGATTTGAACAGGTGTGAACCTTGGGATTTACCTTGGAGGGCTAAAATGGGTGAGAAGGAATGGTATTTTTTCTGTGTGAGGGACAGGAAATATCCAACTGGACTAAGGACAAATAGGGCCACAAGTGCTGGATATTGGAAGGCAACAGGTAAAGACAAAGAAATATATAGAGAGAAGATACTAATTGGAATGAAGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAGAGGTGAAAAAACTAATTGGGTCATGCATGAATACAGATTAGAAGACACATATTCTTTGCATAACATATCCAAAAGAGCTATGAAGGAGTGGTCTATATGCAGAGTGTTTGAGAAAGGTTCTTGTGGAAAGAAAATGCATATTCAAGATTTGGCAAGTTTCAATTCAATTGGAAAAGAACAACTACCTCCATTGATGGATTCACCACCAAACAATAGTGAAACAAAAAATACTATTGGAGATTCATCACATGTGACATGTTACAATGATCCAAATCTAATTGGTTACAATCAAAGGACACAAAAAGATAATGACAATAACATAGTTGATGAAACACCAATGTTAGCATCTTCATATTCTTCAAACCCTTCTTATGATAACAATAATAATATTTCCCCTGCCTCATGGACCCCTACTACTATGTCACACCAATCAAAACAAATTGGAAATTCACATTCTTCAGATTGTTTTATGGTTCAAGAACAATCCATGTTGAAGATGTTGATTGATGAAAATAATGGAACAAGTACAAAAACAAAAAATCCGAAAGCTCAAGAATGTGACTTTGATGTTGACATTTCATCTATGATGTACAACAATGAAATGTTTCAAAGAACATATGTGAGTGAAGAATATTCATCATCTTCAATAGGACATTATGAAAGTGGTTATCTATGGAATTTTTGA 1077 0.3454 MDAMEQNSRDVESDKKFELPPGFRFHPTDEELITHYLSQKVLDNCFCAIAIGEADLNRCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATSAGYWKATGKDKEIYREKILIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEDTYSLHNISKRAMKEWSICRVFEKGSCGKKMHIQDLASFNSIGKEQLPPLMDSPPNNSETKNTIGDSSHVTCYNDPNLIGYNQRTQKDNDNNIVDETPMLASSYSSNPSYDNNNNISPASWTPTTMSHQSKQIGNSHSSDCFMVQEQSMLKMLIDENNGTSTKTKNPKAQECDFDVDISSMMYNNEMFQRTYVSEEYSSSSIGHYESGYLWNF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00467 358 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Trre11g00467 358 FunFam NAC domain-containing protein 100-like 28 173 - -
Trre11g00467 358 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Trre11g00467 358 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Trre11g00467 358 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Trre11g00467 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 275 - -
Trre11g00467 358 MobiDBLite consensus disorder prediction 190 214 - -
Trre11g00467 358 MobiDBLite consensus disorder prediction 196 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00467 Trre-Chr11 3797816 3799621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00467 18 358 NAC Transcription Factor Family AT5G07680 48.830 1.30e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g00467 NAM 3.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00467 - - gmx:100781383 454.907