Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00460 ATGTTGGAAGCCAAAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTACCGGAGATCTCTTCTGGATCCGTTGACTCTACCGGAGCTCCGGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATTGCTCAAAACCATGCTTCTTCCTTAAACTCTTCAAATACAAACATGGATGAAGAAGAGAGAGAAATTGATGAGGACACAATGGAAGAGGAACTGACCAAGTGTAAGAAGGAAAAAGATGAAACTCTTGCTCAATCGTCACAGAAGAACACTGATCTAGACACTGTCTCGAGATTAGTTGAAGAATCTATTAACCCCTCCACCGAAGAGGAGCAAAAGACTAATGAAGAACAGGCTGAGAATGCGCAAGATAAGACCTTGAAAAAGCCAGACAAACTACTTCCTTGCCCCCGATGTAATAGCATGGACACCAAGTTCTGTTACTACAATAATTACAATGTCAACCAGCCGCGTCATTTCTGCAAGAACTGCCAGAGATACTGGACTGCCGGTGGGGCCATGAGAAACGTTCCTGTAGGAGCCGGTCGTAGGAAGAACAAGAATTCTAGTTCTCACTATCGCCAGATAACTGTCTCTGATGCAGCCATTCAGAATTCTCAATCTGACTCGCCTAATGGAATCCATCCTCCTCCTCTGAACTGTAATGGCACAGTCTTTACATTCGGGACTGATTCACCCTTGTGTGAATCTATGGAATCTGCATTGAACATTGTTGATAAAGGAGTTAATAATTGCCCGAAAAATGGATTCATTAGACAGGAAGATCTAAGAATTCATGTTCCCTATGCTGGTGAAGAAAATAGCAATGAATCTCCTGATGCATCGACAACGCCAGCGGATGATGCAACTGTCAACAATTCTCTAGAACAAGTTATGCCGAATTGTCAAAGCTTCCCACCTCAAGTTCCATACTACCCGGGTGCCCCTTGGCTTTTACCGTGGAATCCATCCCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTCGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTACTGTGCCTGGAGCGTGGAACAATCCATGGGTGGCACAACCGTCATCCCCTAGTAGTGCAGCCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCACGTTCAAATTGAACGAAGAAGCAGGTTCTGACGAAAGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCCAAAACATTGAGGATTGATGACTTAGGAGAAGCAGAAAAAAGCTCTATATTGACAACTCTTGGGATTAAAAACAATAAGACAGACATGATTCGCGGGGGAGGACTTTTCAAAGCATTCCCGTCAAAGGACAATGAAAAAGATGGCATGCAAAACTCACCTGTCATGCAGGCCAATCCTGCAGCAATGTCTAGGTCAATTAACTTCCATGAGACCTCATAA 1479 0.4469 MLEAKDPAIKLFGKTIPVPEISSGSVDSTGAPASSSGDAVDDGIAQNHASSLNSSNTNMDEEEREIDEDTMEEELTKCKKEKDETLAQSSQKNTDLDTVSRLVEESINPSTEEEQKTNEEQAENAQDKTLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNSSSHYRQITVSDAAIQNSQSDSPNGIHPPPLNCNGTVFTFGTDSPLCESMESALNIVDKGVNNCPKNGFIRQEDLRIHVPYAGEENSNESPDASTTPADDATVNNSLEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFTVPGAWNNPWVAQPSSPSSAAVNSGPNSPTLGKHSREESTFKLNEEAGSDERNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNNKTDMIRGGGLFKAFPSKDNEKDGMQNSPVMQANPAAMSRSINFHETS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00460 492 MobiDBLite consensus disorder prediction 21 35 - -
Trre11g00460 492 Pfam Dof domain, zinc finger 135 191 IPR003851 GO:0003677|GO:0006355
Trre11g00460 492 MobiDBLite consensus disorder prediction 71 88 - -
Trre11g00460 492 MobiDBLite consensus disorder prediction 465 492 - -
Trre11g00460 492 MobiDBLite consensus disorder prediction 107 134 - -
Trre11g00460 492 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Trre11g00460 492 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Trre11g00460 492 MobiDBLite consensus disorder prediction 460 492 - -
Trre11g00460 492 PANTHER CYCLIC DOF FACTOR 2 4 492 IPR045174 GO:0003700|GO:0006355
Trre11g00460 492 MobiDBLite consensus disorder prediction 89 106 - -
Trre11g00460 492 MobiDBLite consensus disorder prediction 370 391 - -
Trre11g00460 492 MobiDBLite consensus disorder prediction 370 396 - -
Trre11g00460 492 Coils Coil 52 88 - -
Trre11g00460 492 MobiDBLite consensus disorder prediction 15 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00460 Trre-Chr11 3715916 3718461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00460 6 492 C2C2-Dof Transcription Factor Family AT5G39660 42.639 2.15e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre11g00460 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00460 - - mtr:11414470 756.518