Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00454 ATGATGGAGGTTTTAACAACAACAACCACCACCACCACAAACATAAACACAAACACAATCACTACTCCATTAACAAATTCAAAACCACAAGAACCCGAATCAGATAACCCGACCCGAATTCAACAACCCACAACCTTAAACATAACAAAGCCTTTGTCTTTTTCAAATGGGGTTCTTAAACGCCACCACCCAAACAATCACAACCACCATAACAACCACCACAACAACCACCATAACAATAACAACAACGTTGTTGTTTCTTACAAAGAATGTCTTAAAAACCACGTGGCAACTTTAGGTGGTCATGCACTCGATGGTTGTTGTGAATTCATGCCGTCACCAACCGCCACCTCCGACGACCCTGCTTCCATAAAATGCGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCCACCGTTTTTGAATATCAACCACATCACCGCCACCACCCACCTCCGCCGCCGCTTTTTCAGTCCCGTTCACCAAGCTCCCCGTCACCACCGCCAATCTCATCATACCCATCAGCTCCTCATATGCTTTTAGCACTCTCCGGCGCCGGAGTTGGACTCTCAATCCCGCCGGAAAACACAGCAGTACCATTAAACCTTAGTTCTCCTATGGGTTCTAGTAGAAAAAGATTCAGAACGAAATTCACGCAAGAACAAAAGGAAAAGATGCATGAATTTGCTGAAAAAGTTGGGTGGAAGATGCAGAAAAGAGATGAAGAAATGGTGAATGGGTTTTGCAATGAAGTTGGTGTTGATAGAAGTGTACTTAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTAACAGATCATGTTAATGGTAACGGCGACGCCGTGGGAGCCGCCGTTGACGGTGGCTCCGGTGGTGGTTTTAGTGTTCATGAGAATGATAATAATGGGACTAATGTTGCTGCTTGTGGTACTACTAATGGGTCTTCTTCTTCTTCTTGA 990 0.4455 MMEVLTTTTTTTTNINTNTITTPLTNSKPQEPESDNPTRIQQPTTLNITKPLSFSNGVLKRHHPNNHNHHNNHHNNHHNNNNNVVVSYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAVPLNLSSPMGSSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLTDHVNGNGDAVGAAVDGGSGGGFSVHENDNNGTNVAACGTTNGSSSSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00454 329 Pfam ZF-HD protein dimerisation region 86 140 IPR006456 -
Trre11g00454 329 MobiDBLite consensus disorder prediction 157 180 - -
Trre11g00454 329 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 88 139 IPR006456 -
Trre11g00454 329 MobiDBLite consensus disorder prediction 151 180 - -
Trre11g00454 329 Gene3D - 209 278 - -
Trre11g00454 329 MobiDBLite consensus disorder prediction 62 76 - -
Trre11g00454 329 MobiDBLite consensus disorder prediction 1 41 - -
Trre11g00454 329 SUPERFAMILY Homeodomain-like 211 279 IPR009057 -
Trre11g00454 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 277 - -
Trre11g00454 329 NCBIfam homeobox domain, ZF-HD class 218 275 IPR006455 -
Trre11g00454 329 FunFam Zinc-finger homeodomain protein 2 208 279 - -
Trre11g00454 329 MobiDBLite consensus disorder prediction 62 82 - -
Trre11g00454 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 88 139 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00454 Trre-Chr11 3654711 3655700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00454 2 274 ZF-HD Transcription Factor Family AT5G15210 49.466 3.42e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre11g00454 ZF-HD_dimer 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00454 - - lja:Lj5g3v2258260.1 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00454 11 3654711 3655700 Trre13g00176 13 1438119 1439153 PCT