Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00453 ATGTACCCCACAAAATTGCCTTTTACTATCAACTTAGGGGCCACGGGCTCAGCATACCCACAGAGTAACCCCTCCTCCTTGGTTTTGAAGGAAAAAAGAAGAAGAAGGTATATAAAGAAAGAAGAATTAGCAACAAAAATGAGGAAGAGACAAGTAGTTGTGAGAAGATCAGAAGATACACAAAGAAGTGTTGTAAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTTATGGCAAGTAGTGAAGAAGGTACAAATGGTGCTCTAACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAAAGTGTTTCTGAGTGTTCAAATGGTTGA 390 0.3923 MYPTKLPFTINLGATGSAYPQSNPSSLVLKEKRRRRYIKKEELATKMRKRQVVVRRSEDTQRSVVKYGECQKNHAANVGGYAVDGCREFMASSEEGTNGALTCAACGCHRNFHKRELVETESVSECSNG 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00453 129 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Trre11g00453 129 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Trre11g00453 129 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 66 116 IPR006456 -
Trre11g00453 129 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00453 Trre-Chr11 3614376 3617251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00453 47 128 Zinc finger-homeobox gene family AT3G28917 63.158 4.66e-33 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre11g00453 ZF-HD_dimer 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00453 - - aprc:113868039 139.428