Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00450 ATGGTGAGACCTCCATGTTGTGATAAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGATATAATTTTGGTTTCTTATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACCAATACTGGTTTGTTAAGGTGTAGTAAGAGTTGCAGACTTAGATGGACTAATTATCTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGATCAAGAGGAGAAAATGATTATCCATCTCCAAGCTCTTTTGGGAAATAGATGGGCTGCAATAGCTGCATACCTTCCACAAAGAACAGATAATGACATAAAAAATTATTGGAACACTTATTTGAAGAAAAAGCTGAAAAAATTGGAAACAAGTACTTCTTCTGAATCATGTTTAGGACATGATGATGTCTCAGTTTCTCAACCAATAGCTAGAGGACAATGGGAAAGAAGACTTCAAACCAACATTGACATGGCCAAAAAAGCACTTAGTGAAGCTCTTTCTCCACAAAAAAGCACTTCTAGCAACAACTTATTATTACCACTTGAATCAAATATTTCTAGTGAAAGCTCATTTTGTTCAACAAAACCAACCACACAAACACAATCTTTGTGTTATGCTTCAAGTGCTGACAACATAGCTCGGTTGTTGAAAGGTTGGATGAAAAATAGGCCAAAAGGGTCAAATGGTAATTACTCAAATGTGAAACAAAATTCATTTAATATTGATTTAGTTTGTGGAGGAAATTATGAGACTAGTGCTTCTAGTGAAGGAATGGAAAAAGGATCATCAACAAATGTTGAAATTTCTGAGACTTTTGAATATTTTTTTGGTTATGAATCTTTGGATTCATCAAATTCTGATTCTACTAATATTTTTCAAGATGAGAGCAAACCTGAAATTATTGGTGATGGTGAAATTATGCCTTTCTCTTTGCTTGAAAAATGGCTACTAGATGATGGTGGCATTCAAGAGAAAGTTGGTCTTAGTGAAATTAATTGTGTATTTTGA 999 0.3473 MVRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLETSTSSESCLGHDDVSVSQPIARGQWERRLQTNIDMAKKALSEALSPQKSTSSNNLLLPLESNISSESSFCSTKPTTQTQSLCYASSADNIARLLKGWMKNRPKGSNGNYSNVKQNSFNIDLVCGGNYETSASSEGMEKGSSTNVEISETFEYFFGYESLDSSNSDSTNIFQDESKPEIIGDGEIMPFSLLEKWLLDDGGIQEKVGLSEINCVF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00450 332 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre11g00450 332 Gene3D - 12 65 - -
Trre11g00450 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Trre11g00450 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Trre11g00450 332 Gene3D - 68 130 - -
Trre11g00450 332 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre11g00450 332 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Trre11g00450 332 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Trre11g00450 332 CDD SANT 15 60 IPR001005 -
Trre11g00450 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Trre11g00450 332 FunFam MYB-related transcription factor 12 65 - -
Trre11g00450 332 SMART sant 65 113 IPR001005 -
Trre11g00450 332 SMART sant 12 62 IPR001005 -
Trre11g00450 332 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre11g00450 332 CDD SANT 68 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00450 Trre-Chr11 3579630 3581443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00450 1 326 MYB Transcription Factor Family AT5G62470 50.543 1.24e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g00450 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00450 K09422 - gmx:778078 405.216