Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00449 ATGGCTGCTTCATCAATGGCTCTCTCTTCTTCTTCTTCTTTGGTTGGGAAGGCAATCAAGCTTTCCCCGTCCACTCCTGACCTTGGGGTCGGAAGAATCACAATGAGGAAAACAACTACCAAGAAGAATGTTTCTTCTGGAAGCCCATGGTACGGTCCAGACCGTGCCAAGTACTTGGGTCCATTCTCTGGTGAAGCTCCATCCTACCTCACCGGTGAATTCCCCGGTGACTATGGTTGGGACACTGCTGGACTTTCTGCCGACCCAGAGACATTTGCCAAAAACCGTGAACTTGAGGTTATCCACAGTAGATGGGCTATGTTGGGAGCCTTGGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGCGAGGCCGTATGGTTCAAGGCAGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGTAATCCAAGCCTAGTCCATGCACAAAGTATCCTTGCTATCTGGGCTGTCCAAGTTATCTTAATGGGAGCTGTCGAGGGTTACCGCATTGCTGGTGGACCTCTAGGTGAAGTTGTTGACCCACTCTACCCCGGAGGTAGTTTCGACCCATTGGGCCTCGCCGAAGACCCAGAAGCATTTGCAGAGTTAAAGGTAAAAGAACTCAAGAATGGTAGATTAGCTATGTTCTCGATGTTTGGTTTCTTCGTTCAAGCTATTGTAACCGGAAAAGGACCTATAGAGAATCTTGCTGACCACCTTGCTGACCCAGTTAACAACAATGCTTGGGCCTATGCTACAAACTTTGCCCCTGGAAAGTGA 801 0.4919 MAASSMALSSSSSLVGKAIKLSPSTPDLGVGRITMRKTTTKKNVSSGSPWYGPDRAKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00449 266 SUPERFAMILY Chlorophyll a-b binding protein 49 263 - -
Trre11g00449 266 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
Trre11g00449 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 266 IPR001344 GO:0009765|GO:0016020
Trre11g00449 266 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
Trre11g00449 266 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00449 Trre-Chr11 3567917 3568717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00449 1 266 Chloroplast and Mitochondria Gene Families AT1G29930 87.313 1.45e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00449 K08912 - gmx:547819 494.582