LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00448	ATGGCTTCTTCAACAATGGCTCTCTCATCATCATCATTGGTTGGGAAGGCAATCAAGCTTTCCCCCTCTTCATCAGAACTTGTTATGGGAAGAGTCACCATGAGGAAAACAACCACCAAGAAGACTGTTCCTTCTGGAAGTCCGTGGTACGGTCCAGACCGTGTCAAATACTTGGGTCCATTCTCTGGTGAAGCACCATCTTACCTCACTGGTGAATTCCCCGGTGACTATGGTTGGGATACTGCTGGACTTTCAGCCGACCCAGAGACATTTGCCAAAAACCGGGAACTTGAGGTTATCCACAGCAGATGGGCTATGTTGGGAGCCTTGGGATGTGTCTTCCCTGAGCTCTTGTCCCGCAATGGTGTCAAATTTGGCGAGGCCGTGTGGTTCAAGGCAGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTAGGTAACCCAAGCCTAGTCCATGCACAAAGTATCCTTGCTATTTGGGCTGTCCAAGTTATCTTAATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTCGGTGAAGTTGTAGACCCACTCTACCCCGGTGGCAGCTTCGATCCATTAGGCCTTGCTGAAGACCCTGAGGCTTTTGCAGAACTAAAGGTGAAAGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCTATTGTAACCGGAAAGGGACCTCTAGAGAACCTTGCTGACCACATTGCTGACCCCGTCAACAACAACGCTTGGGCCTTTGCCACAAACTTTGTTCCCGGAAAGTGA	798	0.4925	MASSTMALSSSSLVGKAIKLSPSSSELVMGRVTMRKTTTKKTVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK	265

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00448	265	SUPERFAMILY	Chlorophyll a-b binding protein	48	262	-	-
	Trre11g00448	265	FunFam	Chlorophyll a-b binding protein, chloroplastic	56	258	-	-
	Trre11g00448	265	Pfam	Chlorophyll A-B binding protein	65	231	IPR022796	-
	Trre11g00448	265	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	2	265	IPR001344	GO:0009765\|GO:0016020
	Trre11g00448	265	Gene3D	Chlorophyll a/b binding protein domain	56	258	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00448	Trre-Chr11	3564750	3565547	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00448	1	265	Chloroplast and Mitochondria Gene Families	AT1G29930	88.390	3.06e-174	479

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00448	K08912		-	gmx:100800351	492.656

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