Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00446 ATGGCTTCTTCAACAATGGCTCTCTCTTCATCATCATTGGTTGGGAAGGCAATCAAGCTTTCCCCCGCTTCATCAGACCTTGTAATGGGAAGAGTAACCATGAGGAAAACAACCACCAAGAAGACAGTGCCTTCTGGAAGTCCATGGTACGGTCCAGACCGTGTCAAGTACTTGGGTCCATTCTCTGGTGAAGCTCCATCCTACCTCACTGGTGAGTTTCCAGGGGACTATGGTTGGGACACTGCTGGACTTTCAGCCGACCCAGAGACATTTGCCAAAAACCGTGAACTTGAGGTTATTCACAGTAGATGGGCTATGTTGGGAGCCTTGGGATGTGTCTTCCCTGAGCTCTTGTCCCGCAATGGTGTCAAATTTGGCGAGGCCGTGTGGTTCAAGGCAGGATCCCAGATCTTTAGTGAGGGTGGACTTGACTACTTGGGAAACCCAAGCCTAGTCCATGCACAAAGTATCCTTGCTATCTGGGCTGTCCAAGTTATCTTAATGGGAGCTGTTGAGGGTTACCGTATTGCAGGTGGACCTCTCGGTGAAGTTGTCGACCCACTCTACCCAGGTGGCAGCTTTGATCCATTAGGCCTTGCTGATGACCCGGAGGCTTTCGCGGAATTGAAGGTGAAGGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTTGGATTCTTCGTGCAGGCTATTGTGACCGGAAAGGGACCTCTAGAAAACCTTGCTGACCACCTCGCTGACCCAGTCAACAACAATGCGTGGGCCTTTGCCACAAACTTTGTCCCCGGAAAGTGA 798 0.5038 MASSTMALSSSSLVGKAIKLSPASSDLVMGRVTMRKTTTKKTVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00446 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009765|GO:0016020
Trre11g00446 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Trre11g00446 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Trre11g00446 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Trre11g00446 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00446 Trre-Chr11 3557961 3558758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00446 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 88.764 4.30e-174 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00446 K08912 - gmx:100800351 492.656