Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00443 ATGGAAGAAAGAACTGAGATGGAGAATAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTATCTCAAGAGAAAAATTCAGCAAAAATCTCTACCTATTGAACTTATTAAGCAAGTGGATATTTACAAATTTGATCCATGGGACCTTCCAAAGTTGGCTAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGGCCCAATAGAGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGGCCTATATACTCTTCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAAGGTAGAGCTGCTAAAGGGACTAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCTATTTCAGATTCAAATTCTCCTCCCAAAAAATTCTCAGATAAAAGCTTCTCTCCAAATGATTCATGGGCAATTTGTAGGATCTTCAAGAAAACCAATTCCCTTTCCATGGTACAAAAAGCATTATCTCATCCTTGGATCTCTCAATTACCAGGAAGCATGGTATCTGAATTACTTACTCAAACTACAAATATCAACCAATTTTGTTCAGAAAATAATATCTCGTGCACAACAGAACAAGCATCATCAGCAGGGACAAACATACAAATCAACAAGAATGAGCTACAACAAGTCTCCAACACCAACAACTTTTCAGCTTTAGATTTTCCAACATACAAACCAATCAACAACATTAACACAATTTCCAAATCCTCACAAATACCTTGTTCTAATGGAGATATTGTTGATAATCTAATGTTCTACACACTTGAAGCCAATGGTTCCACAAAGTGCCCAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATACAAATAATCAATATAGTGGATTCTCAATTAGTGTACCTCAAGATATGCAACCAAACATTAATGGCTTAGAAACAGAACAATTAGAAGAACAAGGTTGGAGGAAGAATATTCAAGATCAAATGCAGCTTAATCAATGGGACAATCTAGGAAAAACAATTGATTTTCCATTCAGTTTATCTCCAAATTTTGATGCTTTGAGGACTAGTGGTATATGGGATTCACCACCTTGCACAAGTGAAATGTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1209 0.3565 MEERTEMENKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKFDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLTQTTNINQFCSENNISCTTEQASSAGTNIQINKNELQQVSNTNNFSALDFPTYKPINNINTISKSSQIPCSNGDIVDNLMFYTLEANGSTKCPIDDSSILSNTNYIGFEDTNNQYSGFSISVPQDMQPNINGLETEQLEEQGWRKNIQDQMQLNQWDNLGKTIDFPFSLSPNFDALRTSGIWDSPPCTSEMSTTYVTSKCYT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00443 402 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Trre11g00443 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Trre11g00443 402 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Trre11g00443 402 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Trre11g00443 402 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Trre11g00443 402 FunFam NAC domain-containing protein 35 23 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00443 Trre-Chr11 3534568 3537665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00443 12 364 NAC Transcription Factor Family AT1G26870 50.136 5.04e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g00443 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00443 - - mtr:25495303 717.613