Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00442 ATGGAAGAAAGAACTGAGATGGAGAATAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTATCTCAAGAGAAAAATTCAGCAAAAATCTCTACCTATTGAACTTATTAAGCAAGTGGATATTTACAAATTTGATCCATGGGACCTTCCAAAAGAGTTGGCTAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGGCCCAATAGAGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGGCCTATATACTCTTCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAAGGTAGAGCTGCTAAAGGGACTAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCTATTTCAGATTCAAATTCTCCTCCCAAAAAATTCTCAGATAAAAGCTTCTCTCCAAATGATTCATGGGCAATTTGTAGGATCTTCAAGAAAACCAATTCCCTTTCCATGGTACAAAAAGCATTATCTCATCCTTGGATCTCTCAATTACCAGGAAGCATGGTATCTGAATTACTTACTCAAACTACAAATATCAACCAATTTTGTTCAGAAAATAATATCTCGTGCACAACAGAACAAGCATCATCAGCAGGGACAAACATACAAATCAACAAGAATGAGCTACAACAAGTCTCCAACACCAACAACTTTTCAGCTTTAGATTTTCCAACATACAAACCAATCAACAACATTAACACAATTTCCAAATCCTCACAAATACCTTGTTCTAATGGAGATATTGTTGATAATCTAATGTTCTACACACTTGAAGCCAATGGTTCCACAAAGTGCCCAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATACAAATAATCAATATAGTGGATTCTCAATTAGTGTACCTCAAGATATGCAACCAAACATTAATGGCTTAGAAACAGAACAATTAGAAGAACAAGGTTGGAGGAAGAATATTCAAGATCAAATGCAGCTTAATCAATGGGACAATCTAGGAAAAACAATTGATTTTCCATTCAGTTTATCTCCAAATTTTGATGCTTTGAGGACTAGTGGTATATGGGATTCACCACCTTGCACAAGTGAAATGTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1212 0.3564 MEERTEMENKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKFDPWDLPKELASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLTQTTNINQFCSENNISCTTEQASSAGTNIQINKNELQQVSNTNNFSALDFPTYKPINNINTISKSSQIPCSNGDIVDNLMFYTLEANGSTKCPIDDSSILSNTNYIGFEDTNNQYSGFSISVPQDMQPNINGLETEQLEEQGWRKNIQDQMQLNQWDNLGKTIDFPFSLSPNFDALRTSGIWDSPPCTSEMSTTYVTSKCYT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00442 403 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Trre11g00442 403 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 241 - -
Trre11g00442 403 SUPERFAMILY NAC domain 12 173 IPR036093 GO:0003677|GO:0006355
Trre11g00442 403 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Trre11g00442 403 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Trre11g00442 403 FunFam NAC domain-containing protein 35 23 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00442 Trre-Chr11 3534568 3537665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00442 12 365 NAC Transcription Factor Family AT1G26870 50.000 3.74e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g00442 NAM 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00442 - - mtr:25495303 712.99