Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00431 ATGTCTAGCAGAAGGTCAAGGCAACAATCTTCTTCTTCAAGAATTTCTGATGACCAAATCATTGAACTTGTTTCTAAGTTGCGTCAACTTGTTCCTGAGATTCGTCATAGACGTTCCGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACTTGTAATTACATCAGAAGCTTACACAGAGAGGTTGATGATTTAAGTGAACGACTGTCTCAGCTATTGGTCACTATTGATGCTGATAGTCCAGAAGCTAATATTATCAGAAGCTTAATTAATCAATAA 279 0.3763 MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00431 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Trre11g00431 92 Gene3D - 2 85 IPR036638 GO:0046983
Trre11g00431 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Trre11g00431 92 Coils Coil 90 92 - -
Trre11g00431 92 CDD bHLH_AtPRE_like 15 73 - -
Trre11g00431 92 FunFam Transcription factor ILI6 5 87 - -
Trre11g00431 92 Coils Coil 55 75 - -
Trre11g00431 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Trre11g00431 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00431 Trre-Chr11 3409124 3413717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00431 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 4.21e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g00431 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00431 - - gmx:100794486 142.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00431 11 3409124 3413717 Trre13g00164 13 1295839 1296838 PCT