Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00428 ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATCATGACCACCTTCATTCATCTTCATCTTCTCTCAACTCTTTCCCTTCCTTTCCACCTCATCAACACTTTCAAGGTAGTGGTAACCATGGTGGTGCATCTTTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAACAATCACAACAATATGAACAATAAGTGTGATGAATTAATGCATGGAGATGAAGATCAATTATCAGATGATGAAGGTTACTCACAACTTGGTGAAAAGAAGAAGAGGTTGAGTTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGAAACAAACTTGAACCTGATAGGAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAATTCTTAAGAAGCAATTTGAATCTCTTAAAGCTGATAATGATTCCCTTAAGGCTCAAAATCATAAACTTCATGCAGAGCTACAAACTCTAAAGAATAGGGATTGCTTTGAAAATGGAACAATTGGCCTTAAAAAGGAAAATGAATGTTGTTGGAGCAATGGAAGTGATAATAGCTCAGATATGAATCTAGACCTTTCTAGAACACAAATAATGAACAGTCCTGTAACTATACAGAATGGTAAAAATCTTCTACAAACTTCCCTTAAGCCTACAAGTATGACACAACTCCTTCAATCCTCATCAAGATCTGATCTTCAAGATGAAAGCTTTTGCAATATGTTTCACAACATTGATGAGCAGCAAAGTTTATGGCCTTGGACTGATCATCAGCAGCAACATCATTTCCAATAA 891 0.3636 MAFPPSHTFIFQTHEDHHHHDHLHSSSSSLNSFPSFPPHQHFQGSGNHGGASFMMKRSMSFSGIENNHNNMNNKCDELMHGDEDQLSDDEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPDRKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEILKKQFESLKADNDSLKAQNHKLHAELQTLKNRDCFENGTIGLKKENECCWSNGSDNSSDMNLDLSRTQIMNSPVTIQNGKNLLQTSLKPTSMTQLLQSSSRSDLQDESFCNMFHNIDEQQSLWPWTDHQQQHHFQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00428 296 FunFam Homeobox-leucine zipper protein ATHB-13 89 157 - -
Trre11g00428 296 MobiDBLite consensus disorder prediction 75 90 - -
Trre11g00428 296 Pfam Homeobox associated leucine zipper 153 193 IPR003106 GO:0006355|GO:0043565
Trre11g00428 296 MobiDBLite consensus disorder prediction 26 47 - -
Trre11g00428 296 Pfam Homeodomain 98 151 IPR001356 GO:0003677
Trre11g00428 296 Coils Coil 145 193 - -
Trre11g00428 296 SUPERFAMILY Homeodomain-like 88 155 IPR009057 -
Trre11g00428 296 CDD homeodomain 98 154 IPR001356 GO:0003677
Trre11g00428 296 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Trre11g00428 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 286 IPR045224 GO:0003700
Trre11g00428 296 MobiDBLite consensus disorder prediction 65 90 - -
Trre11g00428 296 MobiDBLite consensus disorder prediction 15 53 - -
Trre11g00428 296 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Trre11g00428 296 PRINTS Lambda-repressor HTH signature 124 133 IPR000047 GO:0003677
Trre11g00428 296 PRINTS Lambda-repressor HTH signature 133 149 IPR000047 GO:0003677
Trre11g00428 296 SMART HOX_1 96 157 IPR001356 GO:0003677
Trre11g00428 296 Gene3D - 97 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00428 Trre-Chr11 3353139 3355840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00428 1 288 Homeobox Transcription Factor Family AT3G01220 49.834 4.24e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g00428 Homeodomain 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00428 K09338 - gmx:100790803 397.512