Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00427 ATGGTTGTTGGTACCCCAAAATCTTCCATATCAGGAGTATCAAGATCATCGACTCCTAATAATATAAGTCATAATTTATACCAATTCACGTATCACGATCTAAAGGCAGCGACAAAAAACTTCCTACCAGAATTGTTTCTTGGAGAAGGAGGATTTGGCTCTGTGTATAAGGGTTGGATCGCTCCGAATGAGAGATCTCGATTGCAGATACCAATAGCAGTAAAAAATCTCAACGTAAATGGCTTACAAGGCCACAAAGAATGGGAGGCTGAAATTAACCATCTTGGAGCTCTCTGGCATCCCAATTTGGTGAAACTTATTGGCTATTGTATTGAAGATGAGCATAGGGTGCTTGTTTATGAGTTTATGCCAAGAGGAAGCTTGGAAAATTATCTGTTTAATAGACATAGAACACCTCTCACATGGGGTGTAAGAATGAAAATTATGCTTGGTGCTGCAAAAGGACTTGCATTTCTACATGAGGAATCTAAAAAGCCACTCATATATAGAGATTTCAAAACTTCCAACATCCTATTAGATTCGGAATTCAATGCCAAACTTTCTGATTTTGGGTTAGCTAAAGATGCTCCAGTGGGAGACAAGACTCATGTGTCAACTCAAGTGATTGGAACTCGAGGCTATGTAGATCCTGAGTATGTAATGACAGGACACCTTACATCCAAGAATGATGTCTACAGTTTTGGTGTGGTACTCCTTGAGATGTTAACAGGAAGAAAAGCAATTGACAATAGAAGGCCAAAAAATGAACAATTTTTGGTTGAATGGGTAAAACCATTCTTAAAACAACATGGAGGAGAGTTCTATCAAATAATGGATCCTAATCTCGAAGGGCAATACACAAAAAGAGCTGCTTACAAAGCGATAAAGATAGCGGTAAATTGTATTTACCGTGACCTAAAATCACGACCCTTAATGAGTGAAGTCGTTAAGGAGCTCAAGAATATTCTCGATTATAGTGACATGCCTGGTTCACCATTACCGCCACCACCATTATCGTTTAAGGGATCGGATGCTGGTGCTTCCTCTAGTCATGGTGGCGGCAGTGCTAACAAATGTGATCGAAATGTTGGTTCGTCTTCTTCGGCTATGTCTACTCCGAATCGGTTTCAGGGTTCGCCATTATTGTTTACCCCTCCTTTTCGTTCACCAACTCCTCCTCGTGGTGGAAATGGAAACCCTTGA 1203 0.404 MVVGTPKSSISGVSRSSTPNNISHNLYQFTYHDLKAATKNFLPELFLGEGGFGSVYKGWIAPNERSRLQIPIAVKNLNVNGLQGHKEWEAEINHLGALWHPNLVKLIGYCIEDEHRVLVYEFMPRGSLENYLFNRHRTPLTWGVRMKIMLGAAKGLAFLHEESKKPLIYRDFKTSNILLDSEFNAKLSDFGLAKDAPVGDKTHVSTQVIGTRGYVDPEYVMTGHLTSKNDVYSFGVVLLEMLTGRKAIDNRRPKNEQFLVEWVKPFLKQHGGEFYQIMDPNLEGQYTKRAAYKAIKIAVNCIYRDLKSRPLMSEVVKELKNILDYSDMPGSPLPPPPLSFKGSDAGASSSHGGGSANKCDRNVGSSSSAMSTPNRFQGSPLLFTPPFRSPTPPRGGNGNP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00427 400 ProSitePatterns Protein kinases ATP-binding region signature. 47 75 IPR017441 GO:0005524
Trre11g00427 400 ProSiteProfiles Protein kinase domain profile. 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g00427 400 CDD STKc_IRAK 47 322 - -
Trre11g00427 400 FunFam Serine/threonine-protein kinase BIK1 8 122 - -
Trre11g00427 400 MobiDBLite consensus disorder prediction 326 400 - -
Trre11g00427 400 FunFam Serine/threonine-protein kinase PBS1 123 331 - -
Trre11g00427 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Trre11g00427 400 Gene3D Phosphorylase Kinase; domain 1 6 122 - -
Trre11g00427 400 MobiDBLite consensus disorder prediction 343 379 - -
Trre11g00427 400 SUPERFAMILY Protein kinase-like (PK-like) 21 338 IPR011009 -
Trre11g00427 400 Gene3D Transferase(Phosphotransferase) domain 1 123 328 - -
Trre11g00427 400 Pfam Protein tyrosine and serine/threonine kinase 47 318 IPR001245 GO:0004672|GO:0006468
Trre11g00427 400 PANTHER OS01G0588500 PROTEIN-RELATED 20 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00427 Trre-Chr11 3339206 3341855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00427 20 319 Glycoside Hydrolase AT3G07070 51.987 1.70e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre11g00427 PK_Tyr_Ser-Thr 8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00427 - - mtr:25490803 537.339