Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00419 ATGGAAATGATAATAAAGACTGAAGAGAACAAGAGAAGGAAATTTATTTCCATGGCGGACGATGATTTTCAAGTTATTGCTAAGAGACGACGAAGAGAGCCAGCAGTGGCTGCAATTACTTCCGAGGATAATCAAGGTCAGAATCAACAAGTTTGTCAAAATTCTACTACCACCACCACAAAGAGAAGTTCAAGATTTCGCGGTGTCAGCAGACATAGATGGACAGGTCGATATGAAGCTCACTTATGGGATAAGCTCTCTTGGAACATGACCCAAAAGAAGAAAGGGAAGCAAGGGGCTTACGATGACGAAATATCTGCAGCCAGAGCATATGATTTAGCTGCACTAAAGTACTGGGGAACATTGACTGTCACCAATTTTCCTGTCTCCGAGTATGAGGAACAAGTAGAGATAATGCAAACTATGACAAAAGAGGAGTACTTGGCCACTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGGGCATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAACGGTAGATGGGAAGCAAGGATCGGAAGGGTTTTCGGAAACAAGTATCTTTACCTCGGAACCTACAGCACCCAAGAAGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGAGCCATGCGATAACAAACTTTGACTTGAGTACTTACATGAGATGGTTAAAATCTTCAGCAGGAAATATCTCAGAACCAAAACTTGAAAAACTGGAAGTACCAGAGTCTCAGACAGTGGCATCCCAATCTAACTATTCCCCGATAGAGGGGTCGAAATCCTTGGCCCTCCACAACAGTACTTACAATCCAAATTATGTGAATTCACCTCAAAAGTATGAAGTTTTTGACAATAACATCTCCAGCACTAAGTCGTCTTCTTCTCCAACTGCACTTGGGCTCCTTTTCCGGTCAACAATATTTAGAGAATTAGTTGAAAAGAATTCGAACATATCTAGAGATGAAACTGAAGGGGAAGACATAAAGGATCAACAGCCACAGGCGGCAAGTGGTGTTAATGATGAATTGGATGGGATCTTCTATGATGGAACTGGGTTATCCCCTTACTGA 1089 0.4261 MEMIIKTEENKRRKFISMADDDFQVIAKRRRREPAVAAITSEDNQGQNQQVCQNSTTTTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNMTQKKKGKQGAYDDEISAARAYDLAALKYWGTLTVTNFPVSEYEEQVEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGSHAITNFDLSTYMRWLKSSAGNISEPKLEKLEVPESQTVASQSNYSPIEGSKSLALHNSTYNPNYVNSPQKYEVFDNNISSTKSSSSPTALGLLFRSTIFRELVEKNSNISRDETEGEDIKDQQPQAASGVNDELDGIFYDGTGLSPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00419 362 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677
Trre11g00419 362 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 291 - -
Trre11g00419 362 MobiDBLite consensus disorder prediction 38 64 - -
Trre11g00419 362 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 MobiDBLite consensus disorder prediction 40 64 - -
Trre11g00419 362 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Trre11g00419 362 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677
Trre11g00419 362 SMART rav1_2 65 134 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 SMART rav1_2 164 228 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 CDD AP2 163 224 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 MobiDBLite consensus disorder prediction 323 362 - -
Trre11g00419 362 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 Pfam AP2 domain 64 120 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 CDD AP2 64 130 IPR001471 GO:0003700|GO:0006355
Trre11g00419 362 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700|GO:0006355
Trre11g00419 362 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00419 Trre-Chr11 3271788 3274035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00419 61 226 AP2-EREBP Transcription Factor Family AT5G57390 68.047 8.50e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre11g00419 AP2 3.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00419 - - ahf:112716370 507.294