LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g00414	ATGTCAGGTGAGGAAGTTGTTGCTGTAGCTGAGCCTGTTGCCGTTGCCGCTGCTGGAATTATCATGAATGCCTTGCAACTTGTGCTTAGGAAGTCATTGGCTTATGGTGGTCTTGCATGTGGCCTCCACGAAGGTGCAAAAGTAATTGAGAAGCATGTTGGTCAGCTTTGTGTTCTTGCAGAGGATTGCGACCAACCTGACTATGTTAAACTGGTCAAGGTTGTTTGCGCTGAGCACAATGTTAACCAGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCCGAGGGAAAAGCTAGGAAGGTAGCTGGCTGTTCATGTGTTGCTGTCAAGGATTTTGGCGAGGAACATGAAGCCTACAATGTTGTTCTGCAGCATGTGAAAGCTCAGTGA	417	0.4748	MSGEEVVAVAEPVAVAAAGIIMNALQLVLRKSLAYGGLACGLHEGAKVIEKHVGQLCVLAEDCDQPDYVKLVKVVCAEHNVNQLTVPSAKTLGEWAGLCKIDSEGKARKVAGCSCVAVKDFGEEHEAYNVVLQHVKAQ	138

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g00414	138	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	24	117	IPR004038	-
	Trre11g00414	138	ProSitePatterns	Ribosomal protein S12e signature.	24	42	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g00414	138	Gene3D	-	5	138	IPR029064	-
	Trre11g00414	138	PRINTS	Ribosomal protein S12E family signature	42	58	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g00414	138	PRINTS	Ribosomal protein S12E family signature	108	121	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g00414	138	PRINTS	Ribosomal protein S12E family signature	28	41	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g00414	138	PRINTS	Ribosomal protein S12E family signature	83	104	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g00414	138	PANTHER	40S RIBOSOMAL PROTEIN S12	17	137	-	-
	Trre11g00414	138	SUPERFAMILY	L30e-like	22	136	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g00414	Trre-Chr11	3186661	3187077	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g00414	21	138	Cytoplasmic Ribosomal Protein Gene Family	AT1G15930	70.339	2.19e-57	173

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g00414	K02951		-	gmx:100786733	225.713