Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00412 ATGGCACAAAGTTCTACTAAGGTTTTGTTTATTCTCTTGGTTACTTTTGCCATTATTATTCCATGCCTTGAGGCTGGGATTGGTGAATTTGATGATTTTCTTAAAGCTGAAGCTGATGAAGCCCATAAAATTGCTCTTCAATCTTATATTCCACTTCCACTTGGACATGATAATCATTTCCATGTCCATGGTCACTTATCAATGGAAGAAGCAACACGGAGGGAATTAAAGCAAAAATATGCAGGAAAACAAAAAGTACCATGTGAAGCAACAATTGATAATTGTTGGAGGTGCAAAGCAAATTGGGCAAAAAATCTATATAAGTTAGCCAAATGTGGCAAGGGCATTGGAAATTAA 357 0.3613 MAQSSTKVLFILLVTFAIIIPCLEAGIGEFDDFLKAEADEAHKIALQSYIPLPLGHDNHFHVHGHLSMEEATRRELKQKYAGKQKVPCEATIDNCWRCKANWAKNLYKLAKCGKGIGN 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00412 118 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00412 Trre-Chr11 3183499 3184055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00412 9 117 Polysaccharide Lyase AT1G14420 35.537 1.32e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00412 K01728 - gmx:100785801 147.132