Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00411 ATGGGAAAAATAATGGCACAAAGTTCTACTAAGGTTTTGTTTATTCTCTTGGTTACTTTTGCCATTATTATTCCATGCCTTGAGGCTGGGATTGGTGAATTTGATGATTTTCTTAAAGCTGAAGCTGATGAAGCCCATAAAATTGCTCTTCAATCTTATATTCCACTTCCACTTGGACATGATAATCATTTCCATGTCCATGGTCACTTATCAATGGAAGAAGCAACACGGAGGGAATTAAAGCAAAAATATGCAGGAAAACAAAAAGTACCATGTGAAGCAACAATTGATAATTGTTGGAGGTGCAAAGCAAATTGGGCAAAAAATCTATATAAGTTAGCCAAATGTGGCAAGGGCATTGGAAATTAA 369 0.3577 MGKIMAQSSTKVLFILLVTFAIIIPCLEAGIGEFDDFLKAEADEAHKIALQSYIPLPLGHDNHFHVHGHLSMEEATRRELKQKYAGKQKVPCEATIDNCWRCKANWAKNLYKLAKCGKGIGN 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00411 122 Pfam Pectate lyase, N terminus 31 80 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00411 Trre-Chr11 3183499 3184067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00411 13 121 Polysaccharide Lyase AT1G14420 35.537 1.52e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00411 K01728 - gmx:100785801 150.599