Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00410 ATGGTAGAAAGTTCTACCAAGGTTTTGTTTATTTTCTTGGTTACTTTTGCCATTACAATTCCATGCCTTGAGGCTGGGATTGCTGAGTTTGATGCTTTTCTTAAAGCCCAAGCTGATGAAGCTCATCAACTTGCTCTTGATTCTTATATTCCAGTTCCTGAAGAAGTTGCACATGATCTCAATTTCCATGTTCACTTATCAATGGAAGAAGAAAACAACACAAGGAGGGAATTGAAGGGAAGAGGAGGAAAACATAAAGGACCGTGTGTAGCAAGCAACCCAATTGATAGATGTTGGAGGTGCAAAGCAGATTGGGCTCAAAATAGATTTCAATTAGCAAAATGTGGTAAGGGCTTTGGAAGAAAGGCCACTGGTGGGCTTGGAGGCCCAATTTATGTAGTGACTGATGAGTCAGATAATGACATGGTAACCCCAAAACCTGGTACACTTAGATTTGGTGCTGTCCAAAAAGGACCATTGTGGATAACATTCCAACGTAGTATGATCATTAGATTGAACCAAGAATTGATGGTTTCTTCTGACAAGACAATTGATGGTCGTGGTGTTAATGTTCAAATTAGGGATGGTGCTGGAATTACTATGCAATTTGTTAATAATGTTATTATTCATGGTCTTCATATTACAAATATTAAAGCTAAACCAGGGGGTATGATTAGGGATTCTTTTGATCATGTTGGATTAAGAACAAGGAGTGATGGTGATGCTATTTCTGTTTTTGGATCTTCTAATATTTGGATTGATCATATTTCACTCTCTCAATGTGAGGATGGTCTTGTTGATATTATTCAAGGTTCTACTGGCGTCACCATCTCAAATTGTCACATGACAAAGCATAATGATGTTATGTTATTTGGAGCTAGTGATGATTACAGTAATGACAAGCTTATGCAAATAACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGAATGCCTAGGTGCAGGTTTGGTTTTATTCATGTTTTAAACAATGACTATACTCATTGGATAATGTATGCAATTGGTGGTAGCTCAGGACCAACAATTCTTAGTCAAGGAAACCGATTCATCGCTCCGGACAACGGCGCCGCGAAGGAAATCACACATAGAGATTATGCTCCACCTGAAGTTTGGAAAAATTGGCAATGGTCTTCAGAAATGGACTTGTTCATGAATGGTGCTAAGTTTGTCTCATCTGGTGCACCTATTAATAGGGCACCATACAAAAAAGGGTTTATGATGAAACCAAGAGATGGAACCGCTGTTAGTAGACTAACAAGGTATGCCGGTGCCCTAAATTGTATAGTAGGAAGGCCTTGTTAG 1329 0.3883 MVESSTKVLFIFLVTFAITIPCLEAGIAEFDAFLKAQADEAHQLALDSYIPVPEEVAHDLNFHVHLSMEEENNTRRELKGRGGKHKGPCVASNPIDRCWRCKADWAQNRFQLAKCGKGFGRKATGGLGGPIYVVTDESDNDMVTPKPGTLRFGAVQKGPLWITFQRSMIIRLNQELMVSSDKTIDGRGVNVQIRDGAGITMQFVNNVIIHGLHITNIKAKPGGMIRDSFDHVGLRTRSDGDAISVFGSSNIWIDHISLSQCEDGLVDIIQGSTGVTISNCHMTKHNDVMLFGASDDYSNDKLMQITVAFNHFGQGLIQRMPRCRFGFIHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNGAAKEITHRDYAPPEVWKNWQWSSEMDLFMNGAKFVSSGAPINRAPYKKGFMMKPRDGTAVSRLTRYAGALNCIVGRPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00410 442 Gene3D - 92 435 IPR012334 -
Trre11g00410 442 SMART amb_all 167 364 IPR002022 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Trre11g00410 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Trre11g00410 442 PANTHER PECTATE LYASE 18-RELATED 45 440 IPR045032 GO:0030570
Trre11g00410 442 SUPERFAMILY Pectin lyase-like 93 433 IPR011050 -
Trre11g00410 442 Pfam Pectate lyase 175 358 IPR002022 -
Trre11g00410 442 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00410 Trre-Chr11 3172085 3178600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00410 6 442 Polysaccharide Lyase AT5G15110 54.274 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00410 K01728 - gmx:100785801 725.317