Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00409 ATGGGCATGGAAAAAAAAATGGTAGAAAGTTCTACCAAGGTTTTGTTTATTTTCTTGGTTACTTTTGCCATTACAATTCCATGCCTTGAGGCTGGGATTGCTGAGTTTGATGCTTTTCTTAAAGCCCAAGCTGATGAAGCTCATCAACTTGCTCTTGATTCTTATATTCCAGTTCCTGAAGAAGTTGCACATGATCTCAATTTCCATGTTCACTTATCAATGGAAGAAGAAAACAACACAAGGAGGGAATTGAAGGGAAGAGGAGGAAAACATAAAGGACCGTGTGTAGCAAGCAACCCAATTGATAGATGTTGGAGGTGCAAAGCAGATTGGGCTCAAAATAGATTTCAATTAGCAAAATGTGGTAAGGGCTTTGGAAGAAAGGCCACTGGTGGGCTTGGAGGCCCAATTTATGTAGTGACTGATGAGTCAGATAATGACATGGTAACCCCAAAACCTGGTACACTTAGATTTGGTGCTGTCCAAAAAGGACCATTGTGGATAACATTCCAACGTAGTATGATCATTAGATTGAACCAAGAATTGATGGTTTCTTCTGACAAGACAATTGATGGTCGTGGTGTTAATGTTCAAATTAGGGATGGTGCTGGAATTACTATGCAATTTGTTAATAATGTTATTATTCATGGTCTTCATATTACAAATATTAAAGCTAAACCAGGGGGTATGATTAGGGATTCTTTTGATCATGTTGGATTAAGAACAAGGAGTGATGGTGATGCTATTTCTGTTTTTGGATCTTCTAATATTTGGATTGATCATATTTCACTCTCTCAATGTGAGGATGGTCTTGTTGATATTATTCAAGGTTCTACTGGCGTCACCATCTCAAATTGTCACATGACAAAGCATAATGATGTTATGTTATTTGGAGCTAGTGATGATTACAGTAATGACAAGCTTATGCAAATAACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGAATGCCTAGGTGCAGGTTTGGTTTTATTCATGTTTTAAACAATGACTATACTCATTGGATAATGTATGCAATTGGTGGTAGCTCAGGACCAACAATTCTTAGTCAAGGAAACCGATTCATCGCTCCGGACAACGGCGCCGCGAAGGAAATCACACATAGAGATTATGCTCCACCTGAAGTTTGGAAAAATTGGCAATGGTCTTCAGAAATGGACTTGTTCATGAATGGTGCTAAGTTTGTCTCATCTGGTGCACCTATTAATAGGGCACCATACAAAAAAGGGTTTATGATGAAACCAAGAGATGGAACCGCTGTTAGTAGACTAACAAGGTATGCCGGTGCCCTAAATTGTATAGTAGGAAGGCCTTGTTAG 1347 0.3875 MGMEKKMVESSTKVLFIFLVTFAITIPCLEAGIAEFDAFLKAQADEAHQLALDSYIPVPEEVAHDLNFHVHLSMEEENNTRRELKGRGGKHKGPCVASNPIDRCWRCKADWAQNRFQLAKCGKGFGRKATGGLGGPIYVVTDESDNDMVTPKPGTLRFGAVQKGPLWITFQRSMIIRLNQELMVSSDKTIDGRGVNVQIRDGAGITMQFVNNVIIHGLHITNIKAKPGGMIRDSFDHVGLRTRSDGDAISVFGSSNIWIDHISLSQCEDGLVDIIQGSTGVTISNCHMTKHNDVMLFGASDDYSNDKLMQITVAFNHFGQGLIQRMPRCRFGFIHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNGAAKEITHRDYAPPEVWKNWQWSSEMDLFMNGAKFVSSGAPINRAPYKKGFMMKPRDGTAVSRLTRYAGALNCIVGRPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00409 448 Pfam Pectate lyase, N terminus 33 84 IPR007524 GO:0030570
Trre11g00409 448 SMART amb_all 173 370 IPR002022 -
Trre11g00409 448 Gene3D - 98 441 IPR012334 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Trre11g00409 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Trre11g00409 448 PANTHER PECTATE LYASE 18-RELATED 50 446 IPR045032 GO:0030570
Trre11g00409 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Trre11g00409 448 Pfam Pectate lyase 181 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00409 Trre-Chr11 3172085 3178618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00409 12 448 Polysaccharide Lyase AT5G15110 54.274 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00409 K01728 - gmx:100785801 728.783