Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00392 ATGTTCGGCAACGCTCATCGTTTGTATGGTGTTTCAAACATATTGAAGATACTAAAGGATATTGACGATGATAAGAAAGACGATGCAATGAAATCAATTATTTTTGAGTCGGATATTCGCGCAAAATTCCGGGTTCATGGATGTTTTGGTGTTATTAAATACTATGAAGGTTTGATTAAGGAGTCTATTAAAGAGTTAGATGAAGTAGAAAGTTTACTAGATTATTGTAAGCTAAATTACACTCAACAACAACAAAATCTTCATTCTTCGGCTACTAATGATCAAATTCCAAATATTCCAATATTTAACAATATTTTTAACAATATTGGTGGTGCTTCAAATTATTATCACGATAGTGAAAATAATCATGATACAATGATGAGAGCTTCTTCTTCTTATATAAATATACCTCATGATATTCAGAATATTCGAATTGATCATACAAATTTGAATATAATAAATTCTACGGATACAACAAGGGTTGTACAATTGAGTGATCTAACCAATAGTGGTGTTGACAATGTCATGGAATATAATTATGATGAAGAATTGAAGCTTGATGATGCACAAATTAGTACTGATTTTGATTTTAGGAAAAAAGAAAGATTATTAGATGGTGATAAATTAGCCATTTCGGATTATGAACTTGATATGTTTATTTGTGATAGACAACAATTTGTGCAAAAGGATGCAGCTGAATTCAGCAGTGTGGAATCAAGCCAATCGCAGAATGATCAGTTGAAGAACTTGACTCATATGGAAACAAGCACTCAATCTGAAGTGAGCAAATAA 792 0.3106 MFGNAHRLYGVSNILKILKDIDDDKKDDAMKSIIFESDIRAKFRVHGCFGVIKYYEGLIKESIKELDEVESLLDYCKLNYTQQQQNLHSSATNDQIPNIPIFNNIFNNIGGASNYYHDSENNHDTMMRASSSYINIPHDIQNIRIDHTNLNIINSTDTTRVVQLSDLTNSGVDNVMEYNYDEELKLDDAQISTDFDFRKKERLLDGDKLAISDYELDMFICDRQQFVQKDAAEFSSVESSQSQNDQLKNLTHMETSTQSEVSK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00392 263 ProSiteProfiles LOB domain profile. 1 73 IPR004883 -
Trre11g00392 263 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 117 - -
Trre11g00392 263 MobiDBLite consensus disorder prediction 235 263 - -
Trre11g00392 263 Pfam Lateral organ boundaries (LOB) domain 2 68 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00392 Trre-Chr11 3064696 3065588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00392 1 73 AS2 family AT3G47870 46.575 1.85e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g00392 LOB 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00392 - - tpra:123910294 333.569