Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00391 ATGAATATCATCAAAACAAACAAGGCTTGTGCTGCTTGCAAGTATCAAAGAAGAAAATGCTCTAAAGACTGTCCTTTAGCTCCTTATTTTCCGGCCGATAAACCAAAAATGTTCGGCAACGCTCATCGTTTGTATGGTGTTTCAAACATATTGAAGATACTAAAGGATATTGACGATGATAAGAAAGACGATGCAATGAAATCAATTATTTTTGAGTCGGATATTCGCGCAAAATTCCGGGTTCATGGATGTTTTGGTGTTATTAAATACTATGAAGGTTTGATTAAGGAGTCTATTAAAGAGTTAGATGAAGTAGAAAGTTTACTAGATTATTGTAAGCTAAATTACACTCAACAACAACAAAATCTTCATTCTTCGGCTACTAATGATCAAATTCCAAATATTCCAATATTTAACAATATTTTTAACAATATTGGTGGTGCTTCAAATTATTATCACGATAGTGAAAATAATCATGATACAATGATGAGAGCTTCTTCTTCTTATATAAATATACCTCATGATATTCAGAATATTCGAATTGATCATACAAATTTGAATATAATAAATTCTACGGATACAACAAGGGTTGTACAATTGAGTGATCTAACCAATAGTGGTGTTGACAATGTCATGGAATATAATTATGATGAAGAATTGAAGCTTGATGATGCACAAATTAGTACTGATTTTGATTTTAGGAAAAAAGAAAGATTATTAGATGGTGATAAATTAGCCATTTCGGATTATGAACTTGATATGTTTATTTGTGATAGACAACAATTTGTGCAAAAGGATGCAGCTGAATTCAGCAGTGTGGAATCAAGCCAATCGCAGAATGATCAGTTGAAGAACTTGACTCATATGGAAACAAGCACTCAATCTGAAGTGAGCAAATAA 900 0.3178 MNIIKTNKACAACKYQRRKCSKDCPLAPYFPADKPKMFGNAHRLYGVSNILKILKDIDDDKKDDAMKSIIFESDIRAKFRVHGCFGVIKYYEGLIKESIKELDEVESLLDYCKLNYTQQQQNLHSSATNDQIPNIPIFNNIFNNIGGASNYYHDSENNHDTMMRASSSYINIPHDIQNIRIDHTNLNIINSTDTTRVVQLSDLTNSGVDNVMEYNYDEELKLDDAQISTDFDFRKKERLLDGDKLAISDYELDMFICDRQQFVQKDAAEFSSVESSQSQNDQLKNLTHMETSTQSEVSK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00391 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 153 - -
Trre11g00391 299 Pfam Lateral organ boundaries (LOB) domain 9 104 IPR004883 -
Trre11g00391 299 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Trre11g00391 299 MobiDBLite consensus disorder prediction 271 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00391 Trre-Chr11 3064696 3065696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00391 6 109 AS2 family AT3G47870 55.769 6.04e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g00391 LOB 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00391 - - tpra:123910294 412.149