Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00390 ATGAATATCATCAAAGCATACAAGTCTTGTGCAGCTTGCAAATATCAAAGAAGAAAGTGTTCTAAAGATTGTCCGTTAGCTCCTTATTTTCCGGGCGATAAACCTAAAATGTTTGCTAATGCTCATCGGTTGTTCGGTGTTTCTAATATTTTGACAATATTGAAAGTGGTTAAAGATGAAGATAAAGATGAAGCAATGAAATCAATTATTTTTGAGTCGGATATTCGTGCAAGATTTCAAACTCATGGATGTCTCGGTGTTATTAAGATGTATGAGAGTGCTTTAAAGGAGTGTATTAAAGAGTTAGATGATGTAGAAAGATTACTAGATTATTGTAAGTTAAATTGTCACTCCGTACCTTCTACTAATCACAATATTAGTGATATCATCCCTCCTAGTGATGGTGGCTATGCCATGGAAGACAATCCTAATTTGATGGGAACAAAAGTATTATCCCATAATGAAGAATTAGTTCTTGATAAAGGTGTTGATACAAAAATCTATACAACTTTTAATTTGGGGGAAGAGGAAATATTTTCAGATTATAATATTGATATTGATGATCTTATTTACTTTGGACAACCATTTGAAGAAAAGGATGCATCTCAATTCAGTAGTGTTGTTTCAATCAACCAGAATGATCAGTTGAAGAACATAATGGATGCATTTGATATGGAAACTAGCATTCCAGCTTAA 696 0.3276 MNIIKAYKSCAACKYQRRKCSKDCPLAPYFPGDKPKMFANAHRLFGVSNILTILKVVKDEDKDEAMKSIIFESDIRARFQTHGCLGVIKMYESALKECIKELDDVERLLDYCKLNCHSVPSTNHNISDIIPPSDGGYAMEDNPNLMGTKVLSHNEELVLDKGVDTKIYTTFNLGEEEIFSDYNIDIDDLIYFGQPFEEKDASQFSSVVSINQNDQLKNIMDAFDMETSIPA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00390 231 Coils Coil 88 108 - -
Trre11g00390 231 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Trre11g00390 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
Trre11g00390 231 Pfam Lateral organ boundaries (LOB) domain 9 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00390 Trre-Chr11 3060938 3062015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00390 9 109 AS2 family AT3G47870 53.465 1.44e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g00390 LOB 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00390 - - tpra:123910294 233.417