Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00372 ATGCACTTTGCATCAATAATTCATAATTCACTTACTCTTTCTTCTCAAAATATTTTCATCTTGGCTTTTATTTTTTTGTCATTTTTTTCCTCTCATTTCATAAAAATGGGAAGGCCTCCTTGTTGTGATAAATCCAATGTGAAAAGGGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTAGCCAAACATGGAATTGGAAATTGGACTTTAGTTCCAAAGATAGCAGGGCTTAATAGGTGTGGTAAGAGTTGCAGGCTAAGATGGACTAATTACTTGAGACCTGATCTGAAGCATGATAGTTTCACACCTCAAGAAGAAGAGCTTATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTATTGGAACACAAAATTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTCCTTTCTGACTTAGGAAGTATTAGTAGTCTCACATCAACAACCACTCAAAGCCAAATCAATTATGTCAATAATAATTCAATTTTGGATCACACAAAAGAGGAACCAATTCAATATTCATTGCAAAATGAAAAAGTTCAATATCACCAATTCACAAACCAAGAAAATTTCCAACAAAATATATTAAGTGAAGTTGCATCTTCAAGTTCATCTTCATGTTCCTCTAGTCTAACAAGGTTAAGCTCGCCAATTTCGCTAGCTCAAATGAATTCTAACTTTGATTGGAGTGAGTTTCTTCAAAATGATGACCCTTTTGTGTGGCAAGAAATTCAAAATATTCAACAATGTGACATAAAAAGGGTAATGTCGTCATTGAGCATCTCCGGGGTTTTAATGCAAAATGAAGGTGAAATTTCCAATAATAATAGTAACAATTTCAATGGTATTGGAAATGATAAACAAGGTGGTTCAAGTAAAGGTTTTGAGAGTGTTACTTGTGTTGCAAGCAAAGAATATCAAGTTAATAAGCAATGTGAAGGAAAATCATTTTCAGGAAATTCATTTGTGGATGGTATTTTGGACAAGGATAAAGAGATAAGGGCTGCATTTCCTGAATTATTGGATGATTCTTTTGATTATTAA 1140 0.3368 MHFASIIHNSLTLSSQNIFILAFIFLSFFSSHFIKMGRPPCCDKSNVKRGLWTPEEDAKILAYVAKHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIITLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLTSTTTQSQINYVNNNSILDHTKEEPIQYSLQNEKVQYHQFTNQENFQQNILSEVASSSSSSCSSSLTRLSSPISLAQMNSNFDWSEFLQNDDPFVWQEIQNIQQCDIKRVMSSLSISGVLMQNEGEISNNNSNNFNGIGNDKQGGSSKGFESVTCVASKEYQVNKQCEGKSFSGNSFVDGILDKDKEIRAAFPELLDDSFDY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00372 379 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Trre11g00372 379 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Trre11g00372 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
Trre11g00372 379 Gene3D - 42 102 - -
Trre11g00372 379 FunFam transcription factor MYB80 104 164 - -
Trre11g00372 379 SMART sant 48 98 IPR001005 -
Trre11g00372 379 SMART sant 101 149 IPR001005 -
Trre11g00372 379 PANTHER F14D16.11-RELATED 36 379 - -
Trre11g00372 379 CDD SANT 104 147 IPR001005 -
Trre11g00372 379 CDD SANT 52 96 IPR001005 -
Trre11g00372 379 Gene3D - 103 166 - -
Trre11g00372 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 151 IPR017930 -
Trre11g00372 379 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Trre11g00372 379 Pfam Myb-like DNA-binding domain 104 145 IPR001005 -
Trre11g00372 379 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Trre11g00372 379 FunFam Transcription factor RAX3 42 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00372 Trre-Chr11 2929574 2932365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00372 36 379 MYB Transcription Factor Family AT3G28470 48.209 1.31e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g00372 Myb_DNA-binding 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00372 K09422 - gmx:100815077 400.979