Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g00372 | ATGCACTTTGCATCAATAATTCATAATTCACTTACTCTTTCTTCTCAAAATATTTTCATCTTGGCTTTTATTTTTTTGTCATTTTTTTCCTCTCATTTCATAAAAATGGGAAGGCCTCCTTGTTGTGATAAATCCAATGTGAAAAGGGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTAGCCAAACATGGAATTGGAAATTGGACTTTAGTTCCAAAGATAGCAGGGCTTAATAGGTGTGGTAAGAGTTGCAGGCTAAGATGGACTAATTACTTGAGACCTGATCTGAAGCATGATAGTTTCACACCTCAAGAAGAAGAGCTTATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTATTGGAACACAAAATTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTCCTTTCTGACTTAGGAAGTATTAGTAGTCTCACATCAACAACCACTCAAAGCCAAATCAATTATGTCAATAATAATTCAATTTTGGATCACACAAAAGAGGAACCAATTCAATATTCATTGCAAAATGAAAAAGTTCAATATCACCAATTCACAAACCAAGAAAATTTCCAACAAAATATATTAAGTGAAGTTGCATCTTCAAGTTCATCTTCATGTTCCTCTAGTCTAACAAGGTTAAGCTCGCCAATTTCGCTAGCTCAAATGAATTCTAACTTTGATTGGAGTGAGTTTCTTCAAAATGATGACCCTTTTGTGTGGCAAGAAATTCAAAATATTCAACAATGTGACATAAAAAGGGTAATGTCGTCATTGAGCATCTCCGGGGTTTTAATGCAAAATGAAGGTGAAATTTCCAATAATAATAGTAACAATTTCAATGGTATTGGAAATGATAAACAAGGTGGTTCAAGTAAAGGTTTTGAGAGTGTTACTTGTGTTGCAAGCAAAGAATATCAAGTTAATAAGCAATGTGAAGGAAAATCATTTTCAGGAAATTCATTTGTGGATGGTATTTTGGACAAGGATAAAGAGATAAGGGCTGCATTTCCTGAATTATTGGATGATTCTTTTGATTATTAA | 1140 | 0.3368 | MHFASIIHNSLTLSSQNIFILAFIFLSFFSSHFIKMGRPPCCDKSNVKRGLWTPEEDAKILAYVAKHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIITLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLTSTTTQSQINYVNNNSILDHTKEEPIQYSLQNEKVQYHQFTNQENFQQNILSEVASSSSSSCSSSLTRLSSPISLAQMNSNFDWSEFLQNDDPFVWQEIQNIQQCDIKRVMSSLSISGVLMQNEGEISNNNSNNFNGIGNDKQGGSSKGFESVTCVASKEYQVNKQCEGKSFSGNSFVDGILDKDKEIRAAFPELLDDSFDY | 379 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g00372 | 379 | ProSiteProfiles | Myb-like domain profile. | 44 | 96 | IPR001005 | - | |
Trre11g00372 | 379 | ProSiteProfiles | Myb-like domain profile. | 97 | 147 | IPR001005 | - | |
Trre11g00372 | 379 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 44 | 100 | IPR017930 | - | |
Trre11g00372 | 379 | Gene3D | - | 42 | 102 | - | - | |
Trre11g00372 | 379 | FunFam | transcription factor MYB80 | 104 | 164 | - | - | |
Trre11g00372 | 379 | SMART | sant | 48 | 98 | IPR001005 | - | |
Trre11g00372 | 379 | SMART | sant | 101 | 149 | IPR001005 | - | |
Trre11g00372 | 379 | PANTHER | F14D16.11-RELATED | 36 | 379 | - | - | |
Trre11g00372 | 379 | CDD | SANT | 104 | 147 | IPR001005 | - | |
Trre11g00372 | 379 | CDD | SANT | 52 | 96 | IPR001005 | - | |
Trre11g00372 | 379 | Gene3D | - | 103 | 166 | - | - | |
Trre11g00372 | 379 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 101 | 151 | IPR017930 | - | |
Trre11g00372 | 379 | Pfam | Myb-like DNA-binding domain | 49 | 96 | IPR001005 | - | |
Trre11g00372 | 379 | Pfam | Myb-like DNA-binding domain | 104 | 145 | IPR001005 | - | |
Trre11g00372 | 379 | SUPERFAMILY | Homeodomain-like | 46 | 143 | IPR009057 | - | |
Trre11g00372 | 379 | FunFam | Transcription factor RAX3 | 42 | 102 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g00372 | Trre-Chr11 | 2929574 | 2932365 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g00372 | 36 | 379 | MYB Transcription Factor Family | AT3G28470 | 48.209 | 1.31e-88 | 268 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Trre11g00372 | Myb_DNA-binding | 5.5e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g00372 | K09422 | - | gmx:100815077 | 400.979 |