Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00355 ATGAAGAGGGCAAGAGATGATATTTACTCTTCTTCTCAATTCAAACGTCCCTTTGGTTCTTCACGTGGTGATTCCTATGGCCAAGGCCCTGGGAATGGAGGTGGCGGTGGACTTGTTATCGGCGGAGGAGGAGGTGGGGGAGCAACTACTTCCCAAAAACTGACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAAGACCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCAAGGTGTCATAGAAAGGGTAAAGGACCTCTTCAAAGGTCACAACAATTTGATTTTTGGATTCAACACTTTCCTGCCAAAAGGATATGAGATAACGCTTGATGAAGAGGAGGCTCCTCAGAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGCTTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGGAGATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAAGAGCATAGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCTTTGCAGCGCTTCAATGAGCGAAGTTCTATGACACCCATGATGCGGCAAATGCAAGCAGAAAAGGTACAACGTTATCGGCGAGATCGATTTCCTTCCCATGATCGTGATATGAGTGTTGAACGTCCTGATCTGGATGACGACAAGACAATGATGAACATGCACAAGGAGCAAAGGAAACGTGAGAGCAGGGATAGAAGGATTCGCGATCATGATGATAGAGAACATGATCTTGATAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGGCTGTCTTCTGACTTTGCTTCTCACGATGATAAAGATGCATTAAAGATCATGTCTAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAGCATTCTTGAAGTGCCTTAATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTACAAAATTTGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGAAGGTCATTCATCAAGATCAACCAAGTTGGAGGAAAAAGAACACAAGCGTGAGATGGACGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGAGCTTGGTGCGCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGACGACAGGTTTGAGTTGGACATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGAAGAGTTGTATAACAACATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGCATTGAAGATCAATTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGACGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCCGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCGCAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGACATCGTTCAGTCTATTGCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCTGATGCTGATGCTGATATTCACGAGGATCTGTATAAACTGGTTCGTTATTCATGTGAGGAAGTATTCTCAAGTAAAGAGTTATTCAATAAAATCATGAGGCTCTGGTGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCGCACGGGACAGAAAGGATAGAGGGCAGGAAAGTAGGACAAAGCGCTCGGAGTTCTGTTGCACCTAATGTAGGAGGTGATGGAAGCCCTCACAGAGACTCAATTTCAAGGTTACCAAAATCTGACAAGACTGAAGTTGAAGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGACCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATCTTTTATTGGATAATAAAGGACAGAAAAGTGTTGAATGCAGTGATAAAGCCCCTGGATTTGGTAAACAGATCTCATCTGATGAACAAGCAGCAAGAAACTCTGCATCTGTCAATATTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGACGCTGATGTCTCTGTAACCATAGCCAAGTCTCCGAGTTCTAATGTACCTTTGGTGGAGGGATGTGACGTTGCCACTCCAGTACCAGTTACTAATGGCATGTTAATCGAGAACAGTAAAGTTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGAGGAGGATAACTTTGCTGCCTATGAAGATTCAAATGTGCAGTCAAAGCACAATGTTGATAGTGGCAAATATGAGTCTAAAAATGGAGAGGTTGGAGGTGACAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGGAGATCACGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAGGCTGAGAGCGAAGGTGAAGCTGAGGGGATGTGCGACACACAAACTGGAGGAGATGGCTCACCTTTACCGTTATCAGAGAGGTTCCTTTTGACTGTGAAACCTCTCACAAAGCATGTATCAGCAGTCTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCCGAAATGAAATGGAAAGCAAAAGATTCTACTTCCACAGATTCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCTGCCGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAGTCTTATGTGTTATTCACATTAGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACTGACGAGGAAGACAATAAGCTTCTTCAATTATATGAGTACGAAAAATCTCGGAAACCCGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAGAACATATATCGTTTTCAATCTTCCTCAAGCCCTTCTCGACTCTCCATTCAGCTCATGGACAATATGAATGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAGATTTTTCTTTTTATCTGCACAATGATTTTCTTTCTGTCCTTCCTGCCAAAAAGGAACCTCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAGAAAAAGACGAACATCTTCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAAGGAAAGAGAGGAAAGATACCGCAAATTGATGACGTCCTCCACCTAA 4110 0.4109 MKRARDDIYSSSQFKRPFGSSRGDSYGQGPGNGGGGGLVIGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTQGVIERVKDLFKGHNNLIFGFNTFLPKGYEITLDEEEAPQKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKEIGEVYSEVATLFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERSSMTPMMRQMQAEKVQRYRRDRFPSHDRDMSVERPDLDDDKTMMNMHKEQRKRESRDRRIRDHDDREHDLDNSQRFPDKKKSVKKAEAYGLSSDFASHDDKDALKIMSSQAFSFCEKVKEKLSSAEDYQAFLKCLNIFSNGIIRRNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLATEGHSSRSTKLEEKEHKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNIIENKISVESLSRIEDQFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGAKHPLIPHLEFDFSDADADIHEDLYKLVRYSCEEVFSSKELFNKIMRLWCTFLEPMLGVTSQSHGTERIEGRKVGQSARSSVAPNVGGDGSPHRDSISRLPKSDKTEVEGRVTEVKNGHQTSVATNGKENGSVGRDDLLLDNKGQKSVECSDKAPGFGKQISSDEQAARNSASVNIRGESSVNRTNLDMSPGRVLTPSRPTDADVSVTIAKSPSSNVPLVEGCDVATPVPVTNGMLIENSKVKSHEESSVPCKVEKEEGELSPNADSEEDNFAAYEDSNVQSKHNVDSGKYESKNGEVGGDNDADADDEDSENVSEAGEDVSGSESAGDECSRGDHEEEDMEHDDVDGKAESEGEAEGMCDTQTGGDGSPLPLSERFLLTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFYALFRLHQILYERILSAKENSTSAEMKWKAKDSTSTDSYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPDFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVINGLECKISCNSSKISYVLDTQDFFFRPRRKRRTSSSSSSTSSSRSRKEREERYRKLMTSST 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00355 1369 MobiDBLite consensus disorder prediction 1351 1369 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 226 311 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 797 811 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 424 443 - -
Trre11g00355 1369 PANTHER SIN3B-RELATED 52 1227 IPR039774 GO:0003714
Trre11g00355 1369 MobiDBLite consensus disorder prediction 418 443 - -
Trre11g00355 1369 SUPERFAMILY PAH2 domain 336 401 IPR036600 GO:0006355
Trre11g00355 1369 FunFam Paired amphipathic helix protein Sin3 58 120 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 743 855 - -
Trre11g00355 1369 ProSiteProfiles PAH domain profile. 136 206 IPR003822 GO:0006355
Trre11g00355 1369 MobiDBLite consensus disorder prediction 1 48 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 919 1051 - -
Trre11g00355 1369 Pfam Paired amphipathic helix repeat 75 119 IPR003822 GO:0006355
Trre11g00355 1369 Pfam Paired amphipathic helix repeat 159 203 IPR003822 GO:0006355
Trre11g00355 1369 Pfam Paired amphipathic helix repeat 354 398 IPR003822 GO:0006355
Trre11g00355 1369 ProSiteProfiles PAH domain profile. 332 401 IPR003822 GO:0006355
Trre11g00355 1369 Coils Coil 536 556 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 777 796 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 241 311 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 922 943 - -
Trre11g00355 1369 SUPERFAMILY PAH2 domain 50 121 IPR036600 GO:0006355
Trre11g00355 1369 Gene3D Paired amphipathic helix 58 120 IPR036600 GO:0006355
Trre11g00355 1369 MobiDBLite consensus disorder prediction 1337 1369 - -
Trre11g00355 1369 SMART hdac_interact2seq4b 463 563 IPR013194 -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 969 983 - -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 864 883 - -
Trre11g00355 1369 Pfam Sin3 family co-repressor 465 556 IPR013194 -
Trre11g00355 1369 SUPERFAMILY PAH2 domain 133 205 IPR036600 GO:0006355
Trre11g00355 1369 MobiDBLite consensus disorder prediction 984 998 - -
Trre11g00355 1369 Gene3D Paired amphipathic helix 329 403 IPR036600 GO:0006355
Trre11g00355 1369 FunFam Paired amphipathic helix protein SIN3 329 403 - -
Trre11g00355 1369 Gene3D Paired amphipathic helix 134 207 IPR036600 GO:0006355
Trre11g00355 1369 FunFam Paired amphipathic helix SIN3-like protein 135 206 - -
Trre11g00355 1369 ProSiteProfiles PAH domain profile. 52 122 IPR003822 GO:0006355
Trre11g00355 1369 Pfam C-terminal domain of Sin3a protein 1085 1332 IPR031693 -
Trre11g00355 1369 MobiDBLite consensus disorder prediction 816 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00355 Trre-Chr11 2771714 2780383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g00355 38 155 WRKY Transcription Factor Family AT4G12020 49.580 8.63e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g00355 Sin3a_C 2.2e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00355 K11644 - gmx:100807181 2113.19